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The currently most efficient algorithm for inference with a probabilistic network builds upon a triangulation of a network's graph. In this paper, we show that pre-processing can help in finding good triangulations forprobabilistic…

Artificial Intelligence · Computer Science 2013-01-14 Hans L. Bodlaender , Arie M. C. A. Koster , Frank van den Eijkhof , Linda C. van der Gaag

Decompositions of networks are useful not only for structural exploration. They also have implications and use in analysis and computational solution of processes (such as the Ising model, percolation, SIR model) running on a given network.…

Disordered Systems and Neural Networks · Physics 2020-04-29 Konstantin Klemm

The junction-tree representation provides an attractive structural property for organizing a decomposable graph. In this study, we present two novel stochastic algorithms, which we call the junction-tree expander and junction-tree collapser…

Statistics Theory · Mathematics 2021-02-16 Jimmy Olsson , Tetyana Pavlenko , Felix L. Rios

Bayesian Markov chain Monte Carlo explores tree space slowly, in part because it frequently returns to the same tree topology. An alternative strategy would be to explore tree space systematically, and never return to the same topology. In…

Populations and Evolution · Quantitative Biology 2018-11-28 Chris Whidden , Brian C. Claywell , Thayer Fisher , Andrew F. Magee , Mathieu Fourment , Frederick A. Matsen

To investigate the robustness of the output probabilities of a Bayesian network, a sensitivity analysis can be performed. A one-way sensitivity analysis establishes, for each of the probability parameters of a network, a function expressing…

Artificial Intelligence · Computer Science 2013-01-18 Uffe Kjærulff , Linda C. van der Gaag

The undirected technique for evaluating belief networks [Jensen, et.al., 1990, Lauritzen and Spiegelhalter, 1988] requires clustering the nodes in the network into a junction tree. In the traditional view, the junction tree is constructed…

Artificial Intelligence · Computer Science 2013-02-21 Denise L. Draper

Approximate Bayesian computation (ABC) refers to a family of inference methods used in the Bayesian analysis of complex models where evaluation of the likelihood is difficult. Conventional ABC methods often suffer from the curse of…

Computation · Statistics 2016-07-08 Jingjing Li , David J. Nott , Yanan Fan , Scott A. Sisson

Dropout-based regularization methods can be regarded as injecting random noise with pre-defined magnitude to different parts of the neural network during training. It was recently shown that Bayesian dropout procedure not only improves…

Machine Learning · Statistics 2017-11-07 Kirill Neklyudov , Dmitry Molchanov , Arsenii Ashukha , Dmitry Vetrov

Bayesian networks (BNs) are a widely used class of probabilistic graphical models employed in numerous application domains. However, inferring the network's graphical structure from data remains challenging. Bayesian structure learners…

Machine Learning · Computer Science 2025-11-19 William Zhao , Guy Van den Broeck , Benjie Wang

A market-maker-based prediction market lets forecasters aggregate information by editing a consensus probability distribution either directly or by trading securities that pay off contingent on an event of interest. Combinatorial prediction…

Artificial Intelligence · Computer Science 2012-10-19 Wei Sun , Robin Hanson , Kathryn Blackmond Laskey , Charles Twardy

This paper reviews the basic ideas behind a Bayesian unfolding published some years ago and improves their implementation. In particular, uncertainties are now treated at all levels by probability density functions and their propagation is…

Data Analysis, Statistics and Probability · Physics 2010-10-05 G. D'Agostini

This paper describes a new algorithm for exact Bayesian inference that is based on a recently proposed compositional semantics of Bayesian networks in terms of channels. The paper concentrates on the ideas behind this algorithm, involving a…

Artificial Intelligence · Computer Science 2018-04-24 Bart Jacobs

Bayesian structure learning is the NP-hard problem of discovering a Bayesian network that optimally represents a given set of training data. In this paper we study the computational worst-case complexity of exact Bayesian structure learning…

Machine Learning · Computer Science 2012-03-19 Sebastian Ordyniak , Stefan Szeider

The recent article "A Bayesian conjugate gradient method" by Cockayne, Oates, Ipsen, and Girolami proposes an approximately Bayesian iterative procedure for the solution of a system of linear equations, based on the conjugate gradient…

Numerical Analysis · Mathematics 2019-06-26 T. J. Sullivan

We present an efficient, principled, and interpretable technique for inferring module assignments and for identifying the optimal number of modules in a given network. We show how several existing methods for finding modules can be…

Data Analysis, Statistics and Probability · Physics 2008-06-23 Jake M. Hofman , Chris H. Wiggins

Causal Bayesian networks are widely used tools for summarising the dependencies between variables and elucidating their putative causal relationships. By restricting the search to trees, for example, learning the optimum from data is…

Computation · Statistics 2025-03-10 Felix L. Rios , Giusi Moffa , Jack Kuipers

When a network is reconstructed from data, two types of errors can occur: false positive and false negative errors about the presence or absence of links. In this paper, the vertex degree distribution of the true underlying network is…

Data Analysis, Statistics and Probability · Physics 2020-04-30 Gloria Cecchini , Bjoern Schelter

Functional complex networks have meant a pivotal change in the way we understand complex systems, being the most outstanding one the human brain. These networks have classically been reconstructed using a frequentist approach that, while…

Data Analysis, Statistics and Probability · Physics 2018-03-14 Massimiliano Zanin , Seddik Belkoura , Javier Gomez , Cesar Alfaro , Javier Cano

Reconstructing weighted networks from partial information is necessary in many important circumstances, e.g. for a correct estimation of systemic risk. It has been shown that, in order to achieve an accurate reconstruction, it is crucial to…

Physics and Society · Physics 2017-03-07 Tiziano Squartini , Giulio Cimini , Andrea Gabrielli , Diego Garlaschelli

In recent years, there has been a surge of machine learning applications developed with hierarchical structure, which can be approached from Bi-Level Optimization (BLO) perspective. However, most existing gradient-based methods overlook the…

Optimization and Control · Mathematics 2025-12-16 Risheng Liu , Yaohua Liu , Shangzhi Zeng , Jin Zhang