Related papers: Injective Labeled Oriented Trees are Aspherical
A graph $G$ is asymmetrizable if it has a set of vertices whose setwise stablizer only consists of the identity automorphism. The motion $m$ of a graph is the minimum number of vertices moved by any non-identity automorphism. It is known…
A descent of a labeled acyclic digraph is a directed edge $x\to y$ with $x>y$. In this paper, we find a recurrence for the number of labeled acyclic digraphs with a given number of descents.
The history of gene families - which are equivalent to \emph{event-labeled} gene trees - can be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes. The…
We prove that if $D$ is a digraph of maximum outdegree and indegree at least $k$, and minimum semidegree at least $k/2$ that contains no oriented $4$-cycles, then $D$ contains each oriented tree $T$ with~$k$ arcs. This can be slightly…
A simple and connected $n$-vertex graph has a prime vertex labeling if the vertices can be injectively labeled with the integers $1, 2, 3,\ldots, n$, such that adjacent vertices have relatively prime labels. We will present previously…
In this paper we study natural reconfiguration spaces associated to the problem of distributing a fixed number of resources to labeled nodes of a tree network, so that no node is left empty. These spaces turn out to be cubical complexes,…
Motivated by the study of persistence modules over the real line, we investigate the category of linear representations of a totally ordered set. We show that this category is locally coherent and we classify the indecomposable injective…
We consider two varieties of labeled rooted trees, and the probability that a vertex chosen from all vertices of all trees of a given size uniformly at random has a given rank. We prove that this probability converges to a limit as the tree…
This paper will show when a rooted path tree of a finite directed rooted graph has only finitely many orbits under the action of its undirected automorphism group (i.e. when it is cocompact). This will allow us to specify which trees are…
Let $T$ be a tree on $n$ vertices. We can regard the edges of $T$ as transpositions of the vertex set; their product (in any order) is a cyclic permutation. All possible cyclic permutations arise (each exactly once) if and only if the tree…
We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…
In this paper we prove that the dominator chromatic number of every oriented tree is invariant under reversal of orientation. In addition to this marquee result, we also prove the exact dominator chromatic number for arborescences and…
We show that there exists a graph $G$ with $O(n)$ nodes, where any forest of $n$ nodes is a node-induced subgraph of $G$. Furthermore, for constant arboricity $k$, the result implies the existence of a graph with $O(n^k)$ nodes that…
The sequential data observed in earth science can be regarded as paths in multidimensional space. To read the path effectively, it is useful to convert it into a sequence of numbers called the signature, which can faithfully describe the…
We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…
The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…
The vertices of the Cayley graph of a finitely generated semigroup form a set of sites which can be labeled by elements of a finite alphabet in a manner governed by a nonnegative real interaction matrix, respecting nearest neighbor…
We consider the problem of drawing multiple gene trees inside a single species tree in order to visualize multispecies coalescent trees. Specifically, the drawing of the species tree fills a rectangle in which each of its edges is…
Using the theory of Properly Embedded Graphs developed in an earlier work we define an involutory duality on the set labeled non-crossing trees that lifts the obvious duality in the set of unlabeled non-crossing trees. The set of…
We explore labeled chip-firing on undirected $k$-ary trees, trees where every vertex has degree $k+1$. First, we extend known results for binary trees from Musiker and Nguyen, including the endgame and the locations of the smallest and…