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An extrapolation of the genetic complexity of organisms to earlier times suggests that life began before the Earth was formed. Life may have started from systems with single heritable elements that are functionally equivalent to a…

General Physics · Physics 2013-04-12 Alexei A. Sharov , Richard Gordon

The budding yeast Saccharomyces cerevisiae is important for human food production and as a model organism for biological research. The genetic diversity contained in the global population of yeast strains represents a valuable resource for…

Patent data provides rich information about technical inventions, but does not disclose the ethnic origin of inventors. In this paper, I use supervised learning techniques to infer this information. To do so, I construct a dataset of 95'202…

General Economics · Economics 2022-01-04 Matthias Niggli

As is well known, several Roman sources report on the existence of a town foundation ritual, inherited from the Etruscans, which allegedly included astronomical references. However, the possible existence of astronomical orientations in the…

Popular Physics · Physics 2009-02-16 Giulio Magli

The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal…

To identify genetic changes underlying dog domestication and reconstruct their early evolutionary history, we analyzed novel high-quality genome sequences of three gray wolves, one from each of three putative centers of dog domestication,…

In the past decade, advances in genome sequencing have allowed researchers to uncover the history of hybridization in diverse groups of species, including our own. Although the field has made impressive progress in documenting the extent of…

Populations and Evolution · Quantitative Biology 2021-03-23 Benjamin M Moran , Cheyenne Payne , Quinn Langdon , Daniel L Powell , Yaniv Brandvain , Molly Schumer

Statistical analysis of distributions of occurrence frequencies of short words in 108 microbial complete genomes reveals the existence of a set of universal "root-sequence lengths" shared by all microbial genomes. These lengths and their…

Biological Physics · Physics 2007-05-23 Li-Ching Hsieh , Chang-Heng Chang , Liaofu Luo , Fengmin Ji , Hoong-Chien Lee

Background: Structural Variations, SVs, in a genome can be linked to a disease or characteristic phenotype. The variations come in many types and it is a challenge, not only determining the variations accurately, but also conducting the…

Genomics · Quantitative Biology 2021-03-01 Abhishek Narain Singh

How do words change their meaning? Although semantic evolution is driven by a variety of distinct factors, including linguistic, societal, and technological ones, we find that there is one law that holds universally across five major…

Physics and Society · Physics 2024-04-05 Bogdán Asztalos , Gergely Palla , Dániel Czégel

Farming and herding were introduced to Europe from the Near East and Anatolia; there are, however, considerable arguments about the mechanisms of this transition. Were it people who moved and outplaced the indigenous hunter- gatherer groups…

Multiagent Systems · Computer Science 2011-11-08 Carsten Lemmen , Detlef Gronenborn , Kai W. Wirtz

All non-human great apes are endangered in the wild, and it is therefore important to gain an understanding of their demography and genetic diversity. To date, however, genetic studies within these species have largely been confined to…

Populations and Evolution · Quantitative Biology 2015-06-12 Aylwyn Scally , Bryndis Yngvadottir , Yali Xue , Qasim Ayub , Richard Durbin , Chris Tyler-Smith

De novo assembly is the process of reconstructing the genome sequence of an organism from sequencing reads. Genome sequences are essential to biology, and assembly has been a central problem in bioinformatics for four decades. Until…

Genomics · Quantitative Biology 2023-08-16 Heng Li , Richard Durbin

Evolution has fascinated quantitative and physical scientists for decades: how can the random process of mutation, recombination, and duplication of genetic information generate the diversity of life? What determines the rate of evolution?…

Populations and Evolution · Quantitative Biology 2018-04-23 Richard A. Neher , Aleksandra M. Walczak

Technical signs of progress during the last decades has led to a situation in which the accumulation of genome sequence data is increasingly fast and cheap. The huge amount of molecular data available nowadays can help addressing new and…

Genomics · Quantitative Biology 2017-05-02 Christophe Guyeux , Bashar Al-Nuaimi , Bassam AlKindy , Jean-François Couchot , Michel Salomon

The genetic structure of human populations is extraordinarily complex and of fundamental importance to studies of anthropology, evolution, and medicine. As increasingly many individuals are of mixed origin, there is an unmet need for tools…

The Spanish government recently announced an official fast-track path to citizenship for any individual who is Jewish and whose ancestors were expelled from Spain during the inquisition-related dislocation of Spanish Jews in 1492. It would…

Populations and Evolution · Quantitative Biology 2014-02-05 Joshua S. Weitz

Roman Empire is renowned for sharp logical design and outstanding building quality of its road system. Many roads built by Romans are still use in continental Europe and UK. The Roman roads were built for military transportations with…

Computational Geometry · Computer Science 2012-04-11 Emanuele Strano , Andrew Adamatzky , Jeff Jones

Our knowledge of past cultures relies considerably on written material. For centuries, texts have been copied, altered, then transmitted or lost - eventually, from surviving documents, philologists attempt to reconstruct text phylogenies…

Physics and Society · Physics 2025-06-04 Jean-Baptiste Camps , Julien Randon-Furling , Ulysse Godreau

It is reasonable to hypothesize that the divergence patterns formulated by historical linguists and typologists reflect constraints on human languages, and are thus consistent with Second Language Acquisition (SLA) in a certain way. In this…

Computation and Language · Computer Science 2020-07-20 Yuanyuan Zhao , Weiwei Sun , Xiaojun Wan