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We study the rotational dynamics of a flexible polymer initially wrapped around a rigid rod and unwinding from it. This dynamics is of interest in several problems in biology and constitutes a fundamental instance of polymer relaxation from…

Soft Condensed Matter · Physics 2014-07-29 Jean-Charles Walter , Marco Baiesi , Enrico Carlon , Helmut Schiessel

Dynamic mode decomposition (DMD) provides a principled approach to extract physically interpretable spatial modes from time-resolved flow field data, along with a linear model for how the amplitudes of these modes evolve in time. Recently,…

Fluid Dynamics · Physics 2020-07-29 Aditya G. Nair , Benjamin Strom , Bingni W. Brunton , Steven L. Brunton

We study the dynamics of a tagged monomer of a Rouse polymer for different initial configurations. In the case of free evolution, the monomer displays subdiffusive behavior with strong memory of the initial state. In presence of either…

Statistical Mechanics · Physics 2013-12-03 Shamik Gupta , Alberto Rosso , Christophe Texier

Brownian diffusion of rod-like polymers in the presence of randomly distributed spherical obstacles is studied using molecular dynamics (MD) simulations. It is observed that dependence of the reduced diffusion coefficient of these…

Soft Condensed Matter · Physics 2015-05-20 Farzaneh Sakha , Hossein Fazli

We determine both the in-plane and out-of-plane dynamics of viscoelastic membranes separating two viscous fluids in order to understand microrheological studies of such membranes. We demonstrate the general viscoelastic signatures in the…

Soft Condensed Matter · Physics 2009-11-07 Alex J. Levine , F. C. MacKintosh

In the first part of the paper we show that the constraining potentials introduced to mimic entanglement effects in Edwards' tube model and Flory's constrained junction model are diagonal in the generalized Rouse modes of the corresponding…

Statistical Mechanics · Physics 2009-11-07 Boris Mergell , Ralf Everaers

The settling of highly elastic non-Brownian closed fibres (called loops) under gravity in a viscous fluid is investigated numerically. The loops are represented using a bead-spring model with harmonic bending potential and finitely…

Soft Condensed Matter · Physics 2025-06-18 Yevgen Melikhov , Maria L. Ekiel-Jezewska

Via molecular dynamics simulation with Langevin thermostat we study the structure and dynamics of a flexible bead-spring active polymer model after a quench from good to poor solvent conditions. The self propulsion is introduced via a…

Soft Condensed Matter · Physics 2021-03-18 Subhajit Paul , Suman Majumder , Wolfhard Janke

Active motions of a biological membrane can be induced by non-thermal fluctuations that occur in the outer environment of the membrane. We discuss the dynamics of a membrane interacting hydrodynamically with an active wall that exerts…

Soft Condensed Matter · Physics 2016-05-18 Kento Yasuda , Shigeyuki Komura , Ryuichi Okamoto

We study dynamics of a Rouse polymer chain, which diffuses in a three-dimensional space under the constraint that one of its ends, referred to as the slip-link, may move only along a one-dimensional line containing randomly placed,…

Statistical Mechanics · Physics 2007-05-23 S. Nechaev , G. Oshanin , A. Blumen

We propose a simple mathematical model to describe the mechanical relaxation of cells within a curved epithelial tissue layer represented by an arbitrary curve in two-dimensional space. This model generalises previous one-dimensional models…

Cellular Automata and Lattice Gases · Physics 2025-01-09 Pascal R. Buenzli , Shahak Kuba , Ryan J. Murphy , Matthew J. Simpson

We look at the properties of high frequency eigenmodes for the damped wave equation on a compact manifold with an Anosov geodesic flow. We study eigenmodes with spectral parameters which are asymptotically close enough to the real axis. We…

Mathematical Physics · Physics 2015-05-30 Gabriel Riviere

We study in this work the dynamics of a collection of identical hollow spheres (ping-pong balls) that rest on a horizontal metallic grid. Fluidization is achieved by means of a turbulent air current coming from below. The upflow is adjusted…

Whenever linear eigenmodes of open flows are computed on a numerical domain that is truncated in the streamwise direction, artificial boundary conditions may give rise to spurious pressure signals that are capable of providing unwanted…

Fluid Dynamics · Physics 2019-07-12 Lutz Lesshafft

Although the non-equilibrium behaviour of polymer solutions is generally well understood, particularly in extensional flow, there remain several unanswered questions for dilute solutions in simple shear flow, and full quantitative agreement…

Soft Condensed Matter · Physics 2024-06-19 I. Pincus , A. Rodger , J. Ravi Prakash

The stability of copolymer tethers is investigated theoretically. Self-assembly of diblockor triblock copolymers can lead to tubular polymersomes which are known experimentallyto undergo shape instability under thermal, chemical and tension…

Soft Condensed Matter · Physics 2022-01-12 J. Lyu , K. Xie , R. Chachanidze , A. Kahli , G. Boedec , M. Leonetti

A flexible membrane deforming its shape in time can self-propel in a viscous fluid. Alternatively, if the membrane is anchored, its deformation will lead to fluid transport. Past work in this area focused on situations where the deformation…

Soft Condensed Matter · Physics 2013-02-12 Arthur A. Evans , Eric Lauga

An integrated mechanical model for fiber-laden membranes is presented and representative predictions of relevance to cellulose ordering and orientation in the plant cell wall are presented. The model describes nematic liquid crystalline…

Biological Physics · Physics 2009-06-24 Y. K. Murugesan , A. D. Rey

Motivated by a number of recent experimental and computational studies of the dynamics of fluids plunged in quenched-disordered external fields, we report on a theoretical investigation of this topic within the framework of the…

Soft Condensed Matter · Physics 2018-10-05 Thomas Konincks , Vincent Krakoviack

We analyse the entrainment and energetics of equal and opposite axisymmetric turbulent air plumes in a vertically confined space at a Rayleigh number of $1.24\times 10^{7}$ using theory and direct numerical simulation. On domains of…

Fluid Dynamics · Physics 2020-02-11 John Craske , Megan S. Davies Wykes