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Differential Networks (DNs), tools that encapsulate interactions within intricate systems, are brought under the Bayesian lens in this research. A novel na{\i}ve Bayesian adaptive graphical elastic net (BAE) prior is introduced to estimate…

Methodology · Statistics 2023-06-27 J. Smith , A. Bekker , M. Arashi

To learn (statistical) dependencies among random variables requires exponentially large sample size in the number of observed random variables if any arbitrary joint probability distribution can occur. We consider the case that sparse data…

Machine Learning · Computer Science 2007-05-23 Dominik Janzing , Daniel Herrmann

We introduce a factor analysis model that summarizes the dependencies between observed variable groups, instead of dependencies between individual variables as standard factor analysis does. A group may correspond to one view of the same…

Machine Learning · Statistics 2014-11-19 Seppo Virtanen , Arto Klami , Suleiman A. Khan , Samuel Kaski

Bayesian networks are a versatile and powerful tool to model complex phenomena and the interplay of their components in a probabilistically principled way. Moving beyond the comparatively simple case of completely observed, static data,…

Methodology · Statistics 2020-11-04 Marco Scutari

This paper deals with the Bayesian analysis of graphical models of marginal independence for three way contingency tables. We use a marginal log-linear parametrization, under which the model is defined through suitable zero-constraints on…

Methodology · Statistics 2008-07-08 Ioannis Ntzoufras , Claudia Tarantola

We describe a Big Data-practical, SQL-implementable algorithm for efficiently determining connected components for graph data stored in a Massively Parallel Processing (MPP) relational database. The algorithm described is a linear-space,…

Data Structures and Algorithms · Computer Science 2019-10-18 Harald Bögeholz , Michael Brand , Radu-Alexandru Todor

We propose a Bayesian approximate inference method for learning the dependence structure of a Gaussian graphical model. Using pseudo-likelihood, we derive an analytical expression to approximate the marginal likelihood for an arbitrary…

Machine Learning · Statistics 2017-04-13 Janne Leppä-aho , Johan Pensar , Teemu Roos , Jukka Corander

A model-independent or non-parametric approach for modeling a database has been widely used in cosmology. In these scenarios, the data has been used directly to reconstruct an underlying function. In this work, we introduce a novel…

Cosmology and Nongalactic Astrophysics · Physics 2023-01-19 Ahmad Mehrabi

The causal discovery of Bayesian networks is an active and important research area, and it is based upon searching the space of causal models for those which can best explain a pattern of probabilistic dependencies shown in the data.…

Artificial Intelligence · Computer Science 2016-07-25 Xuhui Zhang , Kevin B. Korb , Ann E. Nicholson , Steven Mascaro

This article presents a survey of work on lifted graphical models. We review a general form for a lifted graphical model, a par-factor graph, and show how a number of existing statistical relational representations map to this formalism. We…

Artificial Intelligence · Computer Science 2011-08-29 Lilyana Mihalkova , Lise Getoor

Most work in the area of statistical relational learning (SRL) is focussed on discrete data, even though a few approaches for hybrid SRL models have been proposed that combine numerical and discrete variables. In this paper we distinguish…

Machine Learning · Computer Science 2015-06-17 Jiuchuan Jiang , Manfred Jaeger

Recent years have seen a rapid expansion of the model space explored in statistical phylogenetics, emphasizing the need for new approaches to statistical model representation and software development. Clear communication and representation…

Populations and Evolution · Quantitative Biology 2013-12-10 Sebastian Höhna , Tracy A. Heath , Bastien Boussau , Michael J. Landis , Fredrik Ronquist , John P. Huelsenbeck

In this work, we evaluate the potential of Large Language Models (LLMs) in building Bayesian Networks (BNs) by approximating domain expert priors. LLMs have demonstrated potential as factual knowledge bases; however, their capability to…

Computation and Language · Computer Science 2025-08-12 Aliakbar Nafar , Kristen Brent Venable , Zijun Cui , Parisa Kordjamshidi

An inductive probabilistic classification rule must generally obey the principles of Bayesian predictive inference, such that all observed and unobserved stochastic quantities are jointly modeled and the parameter uncertainty is fully…

Machine Learning · Statistics 2015-03-25 Henrik Nyman , Jie Xiong , Johan Pensar , Jukka Corander

Clustering of proteins is of interest in cancer cell biology. This article proposes a hierarchical Bayesian model for protein (variable) clustering hinging on correlation structure. Starting from a multivariate normal likelihood, we enforce…

Computation · Statistics 2022-02-09 Riddhi Pratim Ghosh , Arnab Kumar Maity , Mohsen Pourahmadi , Bani K. Mallick

Query answering over probabilistic data is an important task but is generally intractable. However, a new approach for this problem has recently been proposed, based on structural decompositions of input databases, following, e.g., tree…

Databases · Computer Science 2019-08-28 Antoine Amarilli , Silviu Maniu , Mikaël Monet

Relational databases are valuable resources for learning novel and interesting relations and concepts. In order to constraint the search through the large space of candidate definitions, users must tune the algorithm by specifying a…

Databases · Computer Science 2020-04-08 Jose Picado , Arash Termehchy , Sudhanshu Pathak , Alan Fern , Praveen Ilango , Yunqiao Cai

Bayesian models of cognition hypothesize that human brains make sense of data by representing probability distributions and applying Bayes' rule to find the best explanation for available data. Understanding the neural mechanisms underlying…

Neural and Evolutionary Computing · Computer Science 2021-07-02 Milad Kharratzadeh , Thomas R. Shultz

Bayesian networks (BNs) are a probabilistic graphical model widely used for representing expert knowledge and reasoning under uncertainty. Traditionally, they are based on directed acyclic graphs that capture dependencies between random…

Artificial Intelligence · Computer Science 2023-01-23 Christel Baier , Clemens Dubslaff , Holger Hermanns , Nikolai Käfer

Generative models for graphs have been typically committed to strong prior assumptions concerning the form of the modeled distributions. Moreover, the vast majority of currently available models are either only suitable for characterizing…

Social and Information Networks · Computer Science 2012-10-19 Antonino Freno , Mikaela Keller , Gemma C. Garriga , Marc Tommasi