Related papers: Modelling cytoskeletal traffic: an interplay betwe…
We study a minimal model of traffic flows in complex networks, simple enough to get analytical results, but with a very rich phenomenology, presenting continuous, discontinuous as well as hybrid phase transitions between a free-flow phase…
A quasi-linear reduced transport model is developed from a database of high-$\beta$ electromagnetic nonlinear gyrokinetic simulations performed with Spherical Tokamak for Energy Production (STEP) relevant parameters. The quasi-linear model…
We consider macroscopic descriptions of particles where repulsion is modelled by non-linear power-law diffusion and attraction by a homogeneous singular kernel leading to variants of the Keller-Segel model of chemotaxis. We analyse the…
We consider an interacting particle system, which generalizes the classical totally asymmetric simple exclusion process (TASEP), in that each site can contain up to a fixed finite number of particles, and the particle movement is governed…
We report here results on the study of the totally asymmetric simple exclusion processes (TASEP), defined on an open network, consisting of head and tail simple chain segments with a double-chain section inserted in-between. Results of…
Kinetic transport models are mesoscopic mathematical descriptions of the transport of particles as well as their interactions with the background media or among themselves, and they have wide applications in many areas of mathematical…
We investigate Turing pattern formation in a stochastic and spatially discretized version of a reaction diffusion advection (RDA) equation, which was previously introduced to model synaptogenesis in \textit{C. elegans}. The model describes…
In this paper, we propose a general framework for designing numerical schemes that have both well-balanced (WB) and asymptotic preserving (AP) properties, for various kinds of kinetic models. We are interested in two different parameter…
The totally asymmetric simple exclusion process (TASEP) is a stochastic model for the unidirectional dynamics of interacting particles on a $1$D-lattice that is much used in systems biology and statistical physics. Its master equation…
We develop a modified version of the totally asymmetric simple exclusion process (TASEP) and use it to reproduce flow on an escalator with two distinct lanes of pedestrian traffic. The model is used to compare strategies with two standing…
Cytoskeletal motor proteins are involved in major intracellular transport processes which are vital for maintaining appropriate cellular function. The motor exhibits distinct states of motility: active motion along filaments, and…
The one-dimensional totally asymmetric simple exclusion process (TASEP), a Markov process describing classical hard-core particles hopping in the same direction, is considered on a periodic lattice of $L$ sites. The relaxation to the…
The process of diffusion is the most elementary stochastic transport process. Brownian motion, the representative model of diffusion, played a important role in the advancement of scientific fields such as physics, chemistry, biology and…
A significant drawback of Lagrangian (particle-tracking) reactive transport models has been their inability to properly simulate interactions between solid and liquid chemical phases, such as dissolution and precipitation reactions. This…
We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations correspond to different footprints on the substrate: in order to…
A reduced 1D model describing the non-linear hybrid LIGKA/HAGIS simulations was developed and successfully tested in [Carlevaro et al. PPCF 64, 035010 (2022)] addressing the ITER 15MA baseline scenario. In this paper, we introduce a…
The ABC model is a driven diffusive exclusion model, composed of three species of particles that hop on a ring with local asymmetric rates. In the weak asymmetry limit, where the asymmetry vanishes with the length of the system, the model…
We consider the dynamics of a single shock in a partially asymmetric simple exclusion process (PASEP) on a finite lattice with open boundaries in the sublattice-parallel updating scheme. We then construct the steady state of the system by…
Diffusive transport is a universal phenomenon, throughout both biological and physical sciences, and models of diffusion are routinely used to interrogate diffusion-driven processes. However, most models neglect to take into account the…
Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a…