Related papers: Nonlinear DNA dynamics: nonlinearity versus disper…
We study macroevolutionary dynamics by extending microevolutionary competition models to long time scales. It has been shown that for a general class of competition models, gradual evolutionary change in continuous phenotypes (evolutionary…
We analyze the morphological transition of a one-dimensional system described by a scalar field, where a flat state looses its stability. This scalar field may for example account for the position of a crystal growth front, an order…
Wave dynamics in disordered open media is an intriguing topic, and has lately attracted a lot of attention in non-Hermitian physics, especially in photonics. In fact, spatial distributions of gain and loss elements are physically possible…
The distribution of bases spacing in human genome was investigated. An analysis of the frequency of occurrence in the human genome of different sequence lengths flanked by one type of nucleotide was carried out showing that the distribution…
We analyse transcriptional bursting within a stochastic non-equilibrium model which accounts for the coupling between the dynamics of DNA supercoiling and gene transcription. We find a clear signature of bursty transcription when there is a…
We study the static and dynamical properties of DNA in the vicinity of its melting transition, i.e. the separation of the two strands upon heating. The investigation is based on a simple mechanical model which includes the helicoidal…
In order to understand how nonlocal diffusion and pulse intervention affect dynamics of species, we focus on an age-structured nonlocal diffusion model in moving and heterogeneous environment, where nonlocal diffusion describes the long…
The mean compositions of individual components can be tuned to control phase behavior in number-conserving passive mixtures. In this work, we investigate the role of variable average density in a system of infinitely many non-reciprocally…
The interplay between structure and dynamics in non-equilibrium steady-state is far from understood. We address this interplay by tracking Brownian Dynamics trajectories of particles in a binary colloid of opposite charges in an external…
The way in which different types of dynamics unfold in complex networks is intrinsically related to the propagation of activation along nodes, which is strongly affected by the network connectivity. In this work we investigate to which…
In this article we study some aspects of dispersive and concentration phenomena for the Schr\"odinger equation posed on hyperbolic space $\mathbb{H}^n$, in order to see if the negative curvature of the manifold gets the dynamics more stable…
Long length-scale structural deformations of DNA play a central role in many biological processes including gene expression. The elastic rod model, which uses a continuum approximation, has emerged as a viable tool to model deformations of…
An analysis of discrete systems is important for understanding of various physical processes, such as excitations in crystal lattices and molecular chains, the light propagation in waveguide arrays, and the dynamics of Bose-condensate…
An inhomogeneous helicoidal nearest-neighbor model with continuous degrees of freedom is shown to predict the same DNA melting properties as traditional long-range Ising models, for free DNA molecules in solution, as well as superhelically…
Many systems in nature have arborescent and bifurcated structures such as trees, fern, snails, lungs, the blood vessel system, etc. and look self-similar over a wide range of scales. Which are the mechanical and dynamic properties that…
We investigate the kinetics of the DNA melting transition using modified versions of the Peyrard-Dauxois-Bishop and Poland-Scheraga models that include long and short range interactions. Using Brownian dynamics and Monte Carlo simulations,…
In this letter we present an analytic evidence of the non-integrability of the discrete nonlinear Schroedinger equation, a well-known discrete evolution equation which has been obtained in various contexts of physics and biology. We use a…
Shear thinning in dense non-Brownian suspensions is often attributed to shear-induced microstructural evolution, including changes in alignment, anisotropy, and near-contact statistics, yet how these changes influence particle-scale…
Mechanical signaling plays a key role in biological processes like embryo development and cancer growth. One prominent way to probe mechanical properties of tissues is to study their response to externally applied forces. Using a…
We analyze mechanisms and regimes of wave packet spreading in nonlinear disordered media. We predict that wave packets can spread in two regimes of strong and weak chaos. We discuss resonance probabilities, nonlinear diffusion equations,…