Related papers: Nonlinear DNA dynamics: nonlinearity versus disper…
We study the effects of the shear force on the rupture mechanism on a double stranded DNA. Motivated by recent experiments, we perform the atomistic simulations with explicit solvent to obtain the distributions of extension in hydrogen and…
We consider the well-posedness of models involving age structure and non-linear diffusion. Such problems arise in the study of population dynamics. It is shown how diffusion and age boundary conditions can be treated that depend…
We study the properties of mode-mode interactions for waves propagating in nonlinear disordered one-dimensional systems. We focus on i) the localization volume of a mode which defines the number of interacting partner modes, ii) the overlap…
The equilibrium distribution function determines macroscopic observables in statistical physics. While conventional methods correct equilibrium distributions in weakly nonlinear or near-integrable systems, they fail in strongly nonlinear…
We study a nonlinear pseudodifferential equation describing the dynamics of dislocations. The long time asymptotics of solutions is described by the self-similar profiles.
Cellular behavior is governed by gene regulatory processes that are intrinsically dynamic and nonlinear, and are subject to non-negligible amounts of random fluctuations. Such conditions are ubiquitous in physical systems, where they have…
Double stranded DNA chain is known to have nontrivial elasticity. We study the effect of this elasticity on the denaturation profile of DNA oligomer by constraining one base pair at one end of the oligomer to remain in unstretched (or…
Recent experimental data indicate that the elastic wormlike rod model of DNA that works well on long length scales may break down on shorter scales relevant to biology. According to Noy and Golestanian (Phys. Rev. Lett. 109, 228101, 2012)…
A mesoscopic model which allows us to identify and quantify the strength of binding sites in DNA sequences is proposed. The model is based on the Peyrard-Bishop-Dauxois model for the DNA chain coupled to a Brownian particle which explores…
A phenomenological model based on the three-dimensional theory of nonlinear elasticity is developed to describe the phenomenon of overstretching in the force-extension curve for dsDNA. By using the concept of a material with multiple…
The properties of pulse propagation in a nonlinear fiber including linear damped term added in the usual nonlinear Schr\"odinger equation is analyzed analytically. We apply variational modified approach based on the lagrangian that describe…
Non-linear effects in the dynamical evolution of a shearing sheet made of stars are studied. First the implications of hitherto neglected non-linearities of the Boltzmann equation for the dynamical evolution of the shearing sheet are…
A nonlinear inequality is formulated in the paper. An estimate of the rate of growth/decay of solutions to this inequality is obtained. This inequality is of interest in a study of dynamical systems and nonlinear evolution equations. It can…
We investigate the pattern dynamics of the one-dimensional nonreciprocal Swift-Hohenberg model. Characteristic spatiotemporal patterns such as disordered, aligned, swap, chiral-swap, and chiral phases emerge depending on the parameters. We…
The nonlinear dynamics of a warped accretion disc is investigated in the important case of a thin Keplerian disc with negligible viscosity and self-gravity. A one-dimensional evolutionary equation is formally derived that describes the…
We investigate kinetic pathways of the DNA melting transition using variable-range versions of the Poland-Scheraga (PS) and Peyrard-Dauxois-Bishop (PDB) models of DNA. In the PS model, we construct a phi^4-field theory to calculate the…
In this paper we deal with a nonlinear Schr\"{o}dinger equation with chaotic, random, and nonperiodic cubic nonlinearity. Our goal is to study the soliton evolution, with the strength of the nonlinearity perturbed in the space and time…
The Discrete Nonlinear Schroedinger Equation with a random potential in one dimension is studied as a dynamical system. It is characterized by the length, the strength of the random potential and by the field density that determines the…
The nonlinear Schroedinger equation in the presence of disorder is considered. The dynamics of an initially localized wave packet is studied. A subdiffusive spreading of the wave packet is explained in the framework of a continuous time…
It is commonplace to encounter heterogeneous or nonstationary data, of which the underlying generating process changes across domains or over time. Such a distribution shift feature presents both challenges and opportunities for causal…