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In this systems paper, we present MillenniumDB: a novel graph database engine that is modular, persistent, and open source. MillenniumDB is based on a graph data model, which we call domain graphs, that provides a simple abstraction upon…

Curated databases have become important sources of information across scientific disciplines, and due to the manual work of experts, often become important reference works. Features such as provenance tracking, archiving, and data citation…

Programming Languages · Computer Science 2021-07-20 Simon Fowler , Simon D. Harding , Joanna Sharman , James Cheney

Nowadays, many scientific areas share the same need of being able to deal with massive and distributed datasets and to perform on them complex knowledge extraction tasks. This simple consideration is behind the international efforts to…

DBpedia is one of the first and most prominent nodes of the Linked Open Data cloud. It provides structured data for more than 100 Wikipedia language editions as well as Wikimedia Commons, has a mature ontology and a stable and thorough…

Databases · Computer Science 2015-07-16 Ali Ismayilov , Dimitris Kontokostas , Sören Auer , Jens Lehmann , Sebastian Hellmann

The past decade has seen rapid growth in the number of experimentally realized two-dimensional (2D) materials with diverse chemical and physical properties. However, information on their crystal structure, synthesis routes, and measured or…

Digital Science's Dimensions is envisaged as a next-generation research and discovery platform for a better and more efficient access to cross-referenced scholarly publications, grants, patents, and clinical trials. As a new addition to the…

Digital Libraries · Computer Science 2020-12-24 Chaomei Chen

Wikibase -- which is the software underlying Wikidata -- is a powerful platform for knowledge graph creation and management. However, it has been developed with a crowd-sourced knowledge graph creation scenario in mind, which in particular…

Artificial Intelligence · Computer Science 2022-05-30 Cogan Shimizu , Andrew Eells , Seila Gonzalez , Lu Zhou , Pascal Hitzler , Alicia Sheill , Catherine Foley , Dean Rehberger

We describe a document database, developed for BTeV, which has now been adopted for use by other collaborations. A single web based database and archival system is used to maintain public and internal documents as well as documents for a…

High Energy Physics - Experiment · Physics 2007-05-23 E. W. Vaandering

Traditional data storage formats and databases often introduce complexities and inefficiencies that hinder rapid iteration and adaptability. To address these challenges, we introduce ParquetDB, a Python-based database framework that…

Databases · Computer Science 2025-04-23 Logan Lang , Eduardo Hernandez , Kamal Choudhary , Aldo H. Romero

Database Management System (DBMS) is designed to help store and process large collections of data, and is incredibly flexible to perform various kinds of optimizations as long as it achieves serializability with a high-level interface…

Databases · Computer Science 2026-01-28 Yi Lyu , Yiyin Shen , Takashi Matsuzawa

Tackling the information retrieval gap between non-technical database end-users and those with the knowledge of formal query languages has been an interesting area of data management and analytics research. The use of natural language…

Information Retrieval · Computer Science 2020-09-29 Chantal Montgomery , Haruna Isah , Farhana Zulkernine

Interacting with relational databases remains challenging for users across different expertise levels, particularly when composing complex analytical queries or performing administrative tasks. Existing systems typically address either…

Databases · Computer Science 2025-11-21 Xuan-Quang Phan , Tan-Ha Mai , Thai-Duy Dinh , Minh-Thuan Nguyen , Lam-Son Lê

The World Wide Web currently evolves into a Web of Linked Data where content providers publish and link data as they have done with hypertext for the last 20 years. While the declarative query language SPARQL is the de facto for querying…

Databases · Computer Science 2012-04-09 Olaf Hartig

Developers often wonder how to implement a certain functionality (e.g., how to parse XML files) using APIs. Obtaining an API usage sequence based on an API-related natural language query is very helpful in this regard. Given a query,…

Software Engineering · Computer Science 2017-07-17 Xiaodong Gu , Hongyu Zhang , Dongmei Zhang , Sunghun Kim

In the Jupyter ecosystem, data visualization is usually done with "widgets" created as notebook cell outputs. While this mechanism works well in some circumstances, it is not well-suited to presenting interfaces that are long-lived,…

Instrumentation and Methods for Astrophysics · Physics 2022-12-09 Peter K. G. Williams , Jonathan Carifio , Henrik Norman , A. David Weigel

The World Wide Web no longer consists just of HTML pages. Our work sheds light on a number of trends on the Internet that go beyond simple Web pages. The hidden Web provides a wealth of data in semi-structured form, accessible through Web…

Artificial Intelligence · Computer Science 2011-05-11 Fabian Suchanek , Aparna Varde , Richi Nayak , Pierre Senellart

CERN's (European Organization for Nuclear Research) WISDOM project uses XML for the replication of data between different data repositories in a heterogeneous operating system environment. For exchanging data from Web-resident databases,…

Databases · Computer Science 2009-09-29 Uzair Ahmad , Mohammad Waseem Hassan , Arshad Ali , Richard McClatchey , Ian Willers

Relational databases (RDBs) are widely regarded as the gold standard for storing structured information. Consequently, predictive tasks leveraging this data format hold significant application promise. Recently, Relational Deep Learning…

Machine Learning · Computer Science 2025-12-15 Jakub Peleška , Gustav Šír

I present a new kind of astronomical database based on small text files and a distributed version control system. This encourages the community to work collaboratively. It creates a decentralized, completely open and democratic way of…

Earth and Planetary Astrophysics · Physics 2012-12-05 Hanno Rein

Performing massive data mining experiments with multiple datasets and methods is a common task faced by most bioinformatics and computational biology laboratories. WEKA is a machine learning package designed to facilitate this task by…

Mathematical Software · Computer Science 2014-12-19 Madison Flannery , David M Budden , Alexandre Mendes