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We describe a new computational method for the numerically stable particle-based simulation of open-boundary flows, including volume conserving chemical reactions. The novel method is validated for the case of heterogeneous catalysis…

Adaptation and Self-Organizing Systems · Physics 2020-10-09 Sebastian Mühlbauer , Severin Strobl , Thorsten Pöschel

A new mathematical model and numerical approach are proposed for the simulation of fluid and chemical exchanges between a growing capillary network and the surrounding tissue, in the context of tumor-induced angiogenesis. Thanks to proper…

Tissues and Organs · Quantitative Biology 2022-12-02 Stefano Berrone , Chiara Giverso , Denise Grappein , Luigi Preziosi , Stefano Scialò

This work considers the method of uniformisation for continuous-time Markov chains in the context of chemical reaction networks. Previous work in the literature has shown that uniformisation can be beneficial in the context of…

Quantitative Methods · Quantitative Biology 2019-04-18 Casper Beentjes , Ruth Baker

A biochemical network can be simulated by a set of ordinary differential equations (ODE) under well stirred reactor conditions, for large numbers of molecules, and frequent reactions. This is no longer a robust representation when some…

Quantitative Methods · Quantitative Biology 2021-12-17 Guilherme C. P. Innocentini , Arran Hodgkinson , Fernando Antoneli , Arnaud Debussche , Ovidiu Radulescu

Chemical transport models (CTMs), which simulate air pollution transport, transformation, and removal, are computationally expensive, largely because of the computational intensity of the chemical mechanisms: systems of coupled differential…

Atmospheric and Oceanic Physics · Physics 2018-08-14 Makoto M. Kelp , Christopher W. Tessum , Julian D. Marshall

Modern cosmological observations allow us to study in great detail the evolution and history of the large scale structure hierarchy. The fundamental problem of accurate constraints on the cosmological parameters, within a given cosmological…

Astrophysics · Physics 2009-11-13 K. Dolag , S. Borgani , S. Schindler , A. Diaferio , A. M. Bykov

Topology Optimization seeks to find the best design that satisfies a set of constraints while maximizing system performance. Traditional iterative optimization methods like SIMP can be computationally expensive and get stuck in local…

Machine Learning · Computer Science 2023-03-20 Giorgio Giannone , Faez Ahmed

Large Language Models (LLMs) have a natural role in answering complex queries about data streams, but the high computational cost of LLM inference makes them infeasible in many such tasks. We propose online cascade learning, the first…

Machine Learning · Computer Science 2024-06-19 Lunyiu Nie , Zhimin Ding , Erdong Hu , Christopher Jermaine , Swarat Chaudhuri

In this paper, we present a study on how to develop an efficient multiscale simulation strategy for the dynamics of chemically active systems on low-dimensional supports. Such reactions are encountered in a wide variety of situations,…

Computational Physics · Physics 2015-06-04 Giacomo Mazzi , Yannick De Decker , Giovanni Samaey

Continuous normalizing flows (CNFs) and diffusion models (DMs) generate high-quality data from a noise distribution. However, their sampling process demands multiple iterations to solve an ordinary differential equation (ODE) with high…

Machine Learning · Computer Science 2025-11-19 Denis Gudovskiy , Wenzhao Zheng , Tomoyuki Okuno , Yohei Nakata , Kurt Keutzer

The distribution of chemical elements in the hot intracluster medium (ICM) retains valuable information about the enrichment and star formation histories of galaxy clusters, and on the feedback and dynamical processes driving the evolution…

Cosmology and Nongalactic Astrophysics · Physics 2018-12-05 V. Biffi , F. Mernier , P. Medvedev

Many applications of computational fluid dynamics require multiple simulations of a flow under different input conditions. In this paper, a numerical algorithm is developed to efficiently determine a set of such simulations in which the…

Numerical Analysis · Mathematics 2017-05-29 Max Gunzburger , Nan Jiang , Zhu Wang

In this paper we describe a numerical algorithm for integrating the multicomponent, reacting, compressible Navier-Stokes equations, targeted for direct numerical simulation of combustion phenomena. The algorithm addresses two shortcomings…

Numerical Analysis · Mathematics 2015-06-17 M. Emmett , W. Zhang , J. B. Bell

We treat the accurate simulation of the calcination reaction in particles, where the particles are large and, thus, the inner-particle processes must be resolved. Because these processes need to be described with coupled partial…

Fluid Dynamics · Physics 2023-11-28 Lucas Reineking , Torben Bergold , Enric Illana , Viktor Scherer , Martin Mönnigmann

The Holomorphic Embedding Load flow Method (HELM) employs complex analysis to solve the load flow problem. It guarantees finding the correct solution when it exists, and identifying when a solution does not exist. The method, however, is…

Optimization and Control · Mathematics 2020-02-27 Majid Heidarifar , Panagiotis Andrianesis , Michael Caramanis

An efficient technique to simulate turbulent particle-laden flow at high mass loadings within the four-way coupled simulation regime is presented. The technique implements large eddy simulation, discrete phase simulation, a deterministic…

Fluid Dynamics · Physics 2017-09-13 Derrick O. Njobuenwu , Michael Fairweather

The reduction of computational costs for marine ecosystem models is important for the investigation and detection of the relevant biogeochemical processes because such models are computationally expensive. In order to lower these…

Populations and Evolution · Quantitative Biology 2021-11-18 Markus Pfeil , Thomas Slawig

Multiscale and inhomogeneous molecular systems are challenging topics in the field of molecular simulation. In particular, modeling biological systems in the context of multiscale simulations and exploring material properties are driving a…

Computational Physics · Physics 2017-12-06 Horacio V. Guzman , Christoph Junghans , Kurt Kremer , Torsten Stuehn

Efficient stochastic simulation algorithms are of paramount importance to the study of spreading phenomena on complex networks. Using insights and analytical results from network science, we discuss how the structure of contacts affects the…

Physics and Society · Physics 2019-07-24 Guillaume St-Onge , Jean-Gabriel Young , Laurent Hébert-Dufresne , Louis J. Dubé

Network systems consist of subsystems and their interconnections, and provide a powerful framework for analysis, modeling and control of complex systems. However, subsystems may have high-dimensional dynamics, and the amount and nature of…

Optimization and Control · Mathematics 2020-12-07 Xiaodong Cheng , Jacquelien M. A. Scherpen