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Let G be a simple graph without isolated vertices. For a vertex i in G, the degree d_i is the number of vertices adjacent to i and the average 2-degree m_i is the mean of the degrees of the vertices which are adjacent to i. The sequence of…

Combinatorics · Mathematics 2018-11-08 Yu-pei Huang , Chia-an Liu , Chih-wen Weng

A neural code on $ n $ neurons is a collection of subsets of the set $ [n]=\{1,2,\dots,n\} $. In this paper, we study some properties of graphs of neural codes. In particular, we study codeword containment graph (CCG) given by Chan et al.…

Combinatorics · Mathematics 2024-03-27 Suhith K N , Neha Gupta

Graph Neural Networks (GNNs) have been generalized to process the heterogeneous graphs by various approaches. Unfortunately, these approaches usually model the heterogeneity via various complicated modules. This paper aims to propose a…

Machine Learning · Computer Science 2023-11-23 Junfu Wang , Yuanfang Guo , Liang Yang , Yunhong Wang

We introduce a dense counterpart of graph degeneracy, which extends the recently-proposed invariant symmetric difference. We say that a graph has sd-degeneracy (for symmetric-difference degeneracy) at most $d$ if it admits an elimination…

Data Structures and Algorithms · Computer Science 2024-05-16 Édouard Bonnet , Julien Duron , John Sylvester , Viktor Zamaraev

Given a graph $G$, its genus polynomial is $\Gamma_G(x) = \sum_{k\geq 0} g_k(G)x^k$, where $g_k(G)$ is the number of 2-cell embeddings of $G$ in an orientable surface of genus $k$. The Log-Concavity Genus Distribution (LCGD) Conjecture…

Combinatorics · Mathematics 2022-12-21 MacKenzie Carr , Varpreet Dhaliwal , Bojan Mohar

We consider constrained variants of graph homomorphisms such as embeddings, monomorphisms, full homomorphisms, surjective homomorpshims, and locally constrained homomorphisms. We also introduce a new variation on this theme which derives…

Combinatorics · Mathematics 2014-04-23 Yangjing Long

Assume that $G$ is a finite group and let $a$ and $b$ be non-negative integers. We define an undirected graph $\Gamma_{a,b}(G)$ whose vertices correspond to the elements of $G^a\cup G^b$ and in which two tuples $(x_1,\dots,x_a)$ and…

Group Theory · Mathematics 2020-03-06 Cristina Acciarri , Andrea Lucchini

We introduce and study the problem of constructing geometric graphs that have few vertices and edges and that are universal for planar graphs or for some sub-class of planar graphs; a geometric graph is \emph{universal} for a class…

Combinatorics · Mathematics 2020-06-22 Fabrizio Frati , Michael Hoffmann , Csaba D. Tóth

Generative models of graph structure have applications in biology and social sciences. The state of the art is GraphRNN, which decomposes the graph generation process into a series of sequential steps. While effective for modest sizes, it…

Machine Learning · Computer Science 2019-10-18 Tony Duan , Juho Lee

Motivated by the scaling limits of the connected components of the configuration model, we study uniform connected multigraphs with fixed degree sequence $\mathcal{D}$ and with surplus $k$. We call those random graphs…

Probability · Mathematics 2021-12-16 Arthur Blanc-Renaudie

Pedigrees, or family trees, are graphs of family relationships that are used to study inheritance. A fundamental problem in computational biology is to find, for a pedigree with $n$ individuals genotyped at every site, a set of…

Data Structures and Algorithms · Computer Science 2016-02-16 Bonnie Kirkpatrick

A finite set $P$ of points in the plane is $n$-universal with respect to a class $\mathcal{C}$ of planar graphs if every $n$-vertex graph in $\mathcal{C}$ admits a crossing-free straight-line drawing with vertices at points of $P$. For the…

Computational Geometry · Computer Science 2023-03-02 Stefan Felsner , Hendrik Schrezenmaier , Felix Schröder , Raphael Steiner

In this article we present theoretical and computational results on the existence of polyhedral embeddings of graphs. The emphasis is on cubic graphs. We also describe an efficient algorithm to compute all polyhedral embeddings of a given…

Combinatorics · Mathematics 2023-06-22 Gunnar Brinkmann , Thomas Tucker , Nico Van Cleemput

This article is about the graph genus of certain well studied graphs in surface theory: the curve, pants and flip graphs. We study both the genus of these graphs and the genus of their quotients by the mapping class group. The full graphs,…

Geometric Topology · Mathematics 2015-09-08 Hugo Parlier , Bram Petri

An (m,n)-colored mixed graph, or simply, an (m,n)-graph is a graph having m different types of arcs and n different types of edges. A homomorphism of an (m,n)-graph G to another (m,n)-graph H is a vertex mapping that preserves adjacency,…

Combinatorics · Mathematics 2022-01-07 Dipayan Chakraborty , Sandip Das , Soumen Nandi , Debdeep Roy , Sagnik Sen

Let P_{n,m} denote the graph taken uniformly at random from the set of all planar graphs on {1,2,..., n} with exactly m(n) edges. We use counting arguments to investigate the probability that P_{n,m} will contain given components and…

Combinatorics · Mathematics 2011-01-27 Chris Dowden

By definition, a rigid graph in $\mathbb{R}^d$ (or on a sphere) has a finite number of embeddings up to rigid motions for a given set of edge length constraints. These embeddings are related to the real solutions of an algebraic system.…

Combinatorics · Mathematics 2021-10-26 Evangelos Bartzos , Ioannis Z. Emiris , Raimundas Vidunas

We define a statistical ensemble of non-degenerate graphs, i.e. graphs without multiple- and self-connections between nodes. The node degree distribution is arbitrary, but the nodes are assumed to be uncorrelated. This completes our earlier…

Statistical Mechanics · Physics 2009-11-07 Z. Burda , A. Krzywicki

We consider the set of all graphs on n labeled vertices with prescribed degrees D=(d_1, ..., d_n). For a wide class of tame degree sequences D we prove a computationally efficient asymptotic formula approximating the number of graphs within…

Combinatorics · Mathematics 2011-12-05 Alexander Barvinok , J. A. Hartigan

The family of graphs of reduced words of a certain subcollection of permutations in the union $\cup_{n\geq 4}\frak{S}_{n}$ of symmetic groups is investigated. The subcollection is characterised by the hook cycle type $(n-2,1,1)$ with…

Combinatorics · Mathematics 2024-06-17 Praise Adeyemo