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Developmental constraints have been postulated to limit the space of feasible phenotypes and thus shape animal evolution. These constraints have been suggested to be the strongest during either early or mid-embryogenesis, which corresponds…

Populations and Evolution · Quantitative Biology 2013-03-14 Barbara Piasecka , Pawel Lichocki , Sebastien Moretti , Sven Bergmann , Marc Robinson-Rechavi

One of the greatest challenges of terrestrial locomotion is resisting gravity. The morphological adaptive features of the limb long-bones of extant elephants, the heaviest living terrestrial animals, have previously been highlighted;…

A fundamental issue discussed in evolutionary biology is the transition from unicellular to multicellular organisms. Here we develop non-robust models provided in [1] and attempt to get robust models investigated how differentiation of…

Populations and Evolution · Quantitative Biology 2015-12-15 Denis Tverskoy

Undulatory locomotion, as seen in the nematode \emph{Caenorhabditis elegans}, is a common swimming gait of organisms in the low Reynolds number regime, where viscous forces are dominant. While the nematode's motility is expected to be a…

Biological Physics · Physics 2017-08-02 Josue Sznitman , Prashant K. Purohit , Predrag Krajacic , Todd Lamitina , Paulo E. Arratia

The insect olfactory system, which includes the antennal lobe (AL), mushroom body (MB), and ancillary structures, is a relatively simple neural system capable of learning. Its structural features, which are widespread in biological neural…

Neurons and Cognition · Quantitative Biology 2018-02-09 Charles B. Delahunt , Jeffrey A. Riffell , J. Nathan Kutz

Foot stiffness underlies its mechanical function, and is central to the evolution of human bipedal locomotion. The stiff and propulsive human foot has two distinct arches, the longitudinal and transverse. By contrast, the feet of non-human…

Biological Physics · Physics 2020-05-20 Madhusudhan Venkadesan , Marcelo A. Dias , Dhiraj K. Singh , Mahesh M. Bandi , Shreyas Mandre

Active nematics are a class of far-from-equilibrium materials characterized by local orientational order of force-generating, anisotropic constitutes. Traditional methods for predicting the dynamics of active nematics rely on hydrodynamic…

We study the dynamics of a \emph{myopic} forager that randomly wanders on a lattice in which each site contains one unit of food. Upon encountering a food-containing site, the forager eats all the food at this site with probability $p<1$;…

Statistical Mechanics · Physics 2018-07-17 C. L. Rager , U. Bhat , O. Bénichou , S. Redner

The expansion of deleted mitochondrial DNA (mtDNA) molecules has been linked to ageing, particularly in skeletal muscle fibres; its mechanism has remained unclear for three decades. Previous accounts assigned a replicative advantage to the…

Populations and Evolution · Quantitative Biology 2020-09-02 Ferdinando Insalata , Hanne Hoitzing , Juvid Aryaman , Nick S. Jones

Biofilm infections on medical implants are difficult to eradicate because insufficient nutrient availability promotes antibiotic-tolerant persister cells that survive treatment and reseed growth. Existing mathematical models usually omit…

Populations and Evolution · Quantitative Biology 2025-09-23 Parna Mandal , Nigel J. Mottram , Sean McGinty

Condensed active matter is exemplary for its capacity to morph and exhibit internal flows despite remaining cohered. To facilitate understanding of this ability, we investigate the cause of finger-like protrusions that emerge from…

Soft Condensed Matter · Physics 2021-01-01 Robert J. Wagner , Kristen Such , Ethan Hobbs , Franck J. Vernerey

Sessile drying droplets in various bio-relevant systems, encompassing passive bio-colloids like DNA, proteins, and blood to active microbes, gain considerable attention due to intricate interplay among different convective flows, droplet…

Soft Condensed Matter · Physics 2023-12-27 Anusuya Pal , Anupam Sengupta , Miho Yanagisawa

Ammonoids are a group of extinct mollusks belonging to the same class of the living genus Nautilus (Cephalopoda). In both Nautili and ammonoids, the (usually planospiral) shell is divided into chambers separated by septa that during the…

Other Quantitative Biology · Quantitative Biology 2007-05-23 Fabio Vittorio De Blasio

Organisms in nature, such as Cephalopods and Pachyderms, exploit stiffness modulation to achieve amazing dexterity in the control of their appendages. In this paper, we explore the phenomenon of layer jamming, which is a popular stiffness…

Robotics · Computer Science 2026-04-22 Jessica Gumowski , Krishna Manaswi Digumarti , David Howard

Anaerobic digestion enables the water industry to treat wastewater as a resource for generating energy and recovering valuable by-products. The complexity of the anaerobic digestion process has motivated the development of complex models.…

Populations and Evolution · Quantitative Biology 2015-03-06 M. J. Wade , R. W. Pattinson , N. G. Parker , J. Dolfing

The arrival of Modern Humans (MHs) in Europe between 50 ka and 36 ka coincides with significant changes in human behaviour, regarding the production of tools, the exploitation of resources and the systematic use of ornaments and colouring…

Residential mobility is deeply entangled with all aspects of hunter-gatherer life ways, and is therefore an issue of central importance in hunter-gatherer studies. Hunter-gatherers vary widely in annual rates of residential mobility, and…

Physics and Society · Physics 2016-07-26 Marcus J. Hamilton , Jose Lobo , Eric Rupley , Hyejin Youn , Geoffrey B. West

Thanks to recent technological advances, it is now possible to track with an unprecedented precision and for long periods of time the movement patterns of many living organisms in their habitat. The increasing amount of data available on…

Populations and Evolution · Quantitative Biology 2015-05-19 Denis Boyer , Peter D. Walsh

Accurate computational identification of DNA methylation is essential for understanding epigenetic regulation. Although deep learning excels in this binary classification task, its "black-box" nature impedes biological insight. We address…

Machine Learning · Computer Science 2026-02-27 Yi He , Yina Cao , Jixiu Zhai , Di Wang , Junxiao Kong , Tianchi Lu

Food webs are networks describing who is eating whom in an ecological community. By now it is clear that many aspects of food-web structure are reproducible across diverse habitats, yet little is known about the driving force behind this…

Populations and Evolution · Quantitative Biology 2007-05-23 A. G. Rossberg , H. Matsuda , T. Amemiya , K. Itoh
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