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BioFabrics were introduced by Longabaugh in 2012 as a way to draw large graphs in a clear and uncluttered manner. The visual quality of BioFabrics crucially depends on the order of vertices and edges, which can be chosen independently.…

Human-Computer Interaction · Computer Science 2026-05-19 Jules Wulms , Wouter Meulemans , Bettina Speckmann

Higher-order rewriting is a framework in which one can write higher-order programs and study their properties. One such property is termination: the situation that for all inputs, the program eventually halts its execution and produces an…

Logic in Computer Science · Computer Science 2023-08-08 Niels van der Weide , Deivid Vale , Cynthia Kop

The richness of many complex systems stems from the interactions among their components. The higher-order nature of these interactions, involving many units at once, and their temporal dynamics constitute crucial properties that shape the…

Physics and Society · Physics 2024-07-29 Marco Mancastroppa , Iacopo Iacopini , Giovanni Petri , Alain Barrat

Networks can describe the structure of a wide variety of complex systems by specifying which pairs of entities in the system are connected. While such pairwise representations are flexible, they are not necessarily appropriate when the…

Social and Information Networks · Computer Science 2022-01-17 Jean-Gabriel Young , Giovanni Petri , Tiago P. Peixoto

We report on work in progress on 'nested term graphs' for formalizing higher-order terms (e.g. finite or infinite lambda-terms), including those expressing recursion (e.g. terms in the lambda-calculus with letrec). The idea is to represent…

Logic in Computer Science · Computer Science 2015-05-28 Clemens Grabmayer , Vincent van Oostrom

Many graph problems can be solved using ordered parallel graph algorithms that achieve significant speedup over their unordered counterparts by reducing redundant work. This paper introduces a new priority-based extension to GraphIt, a…

Programming Languages · Computer Science 2020-01-28 Yunming Zhang , Ajay Brahmakshatriya , Xinyi Chen , Laxman Dhulipala , Shoaib Kamil , Saman Amarasinghe , Julian Shun

Port-Hamiltonian system theory is a well-known framework for the control of complex physical systems. The majority of port-Hamiltonian control design methods base on an explicit input-state-output port-Hamiltonian model for the system under…

Systems and Control · Electrical Eng. & Systems 2019-09-09 Martin Pfeifer , Sven Caspart , Silja Pfeiffer , Charles Muller , Stefan Krebs , Soeren Hohmann

Bond graph is a unified graphical approach for describing the dynamics of complex engineering and physical systems and is widely adopted in a variety of domains, such as, electrical, mechanical, medical, thermal and fluid mechanics.…

Logic in Computer Science · Computer Science 2021-11-25 Ujala Qasim , Adnan Rashid , Osman Hasan

Looped Transformers have shown exceptional neural algorithmic reasoning capability in simulating traditional graph algorithms, but their application to more complex structures like hypergraphs remains underexplored. Hypergraphs generalize…

Machine Learning · Computer Science 2026-01-27 Zekai Huang , Yingyu Liang , Zhenmei Shi , Zhao Song , Zhen Zhuang

We present a form of algebraic reasoning for computational objects which are expressed as graphs. Edges describe the flow of data between primitive operations which are represented by vertices. These graphs have an interface made of…

Logic in Computer Science · Computer Science 2010-07-23 Lucas Dixon , Ross Duncan , Aleks Kissinger

Recent work at the intersection of formal language theory and graph theory has explored graph grammars for graph modeling. However, existing models and formalisms can only operate on homogeneous (i.e., untyped or unattributed) graphs. We…

Social and Information Networks · Computer Science 2023-01-06 Satyaki Sikdar , Neil Shah , Tim Weninger

Recently, it has been claimed that some complex networks are self-similar under a convenient renormalization procedure. We present a general method to study renormalization flows in graphs. We find that the behavior of some variables under…

Physics and Society · Physics 2009-11-13 Filippo Radicchi , José Javier Ramasco , Alain Barrat , Santo Fortunato

In complex systems (e.g., communication, transportation, and biological networks), high robustness ensures sustained functionality and stability even when resisting attacks. However, the inherent structure complexity and the…

Physics and Society · Physics 2025-06-13 Xilong Qu , Wenbin Pei , Haifang Li , Qiang Zhang , Bing Xue , Mengjie Zhang

Representing patterns as labeled graphs is becoming increasingly common in the broad field of computational intelligence. Accordingly, a wide repertoire of pattern recognition tools, such as classifiers and knowledge discovery procedures,…

Computer Vision and Pattern Recognition · Computer Science 2017-05-11 Lorenzo Livi

We use automated theorem provers to significantly shorten a formal development in higher order set theory. The development includes many standard theorems such as the fundamental theorem of arithmetic and irrationality of square root of…

Logic in Computer Science · Computer Science 2025-09-11 Chad E. Brown , Cezary Kaliszyk , Martin Suda , Josef Urban

Interpretation methods and their restrictions to polynomials have been deeply used to control the termination and complexity of first-order term rewrite systems. This paper extends interpretation methods to a pure higher order functional…

Logic in Computer Science · Computer Science 2023-06-22 Emmanuel Hainry , Romain Péchoux

In this paper, we develop a novel paradigm, namely hypergraph shift, to find robust graph modes by probabilistic voting strategy, which are semantically sound besides the self-cohesiveness requirement in forming graph modes. Unlike the…

Artificial Intelligence · Computer Science 2017-04-13 Yang Wang , Lin Wu

We introduce a new symbolic representation based on an original generalization of counter abstraction. Unlike classical counter abstraction (used in the analysis of parameterized systems with unordered or unstructured topologies) the new…

Logic in Computer Science · Computer Science 2015-03-20 Ahmed Rezine

The representation of graphs is commonly based on the adjacency matrix concept. This formulation is the foundation of most algebraic and computational approaches to graph processing. The advent of deep learning language models offers a wide…

Artificial Intelligence · Computer Science 2025-12-16 Ezequiel Lopez-Rubio

This article investigates how graph matching can be applied to process plant design data in order to support the reuse of previous designs. A literature review of existing graph matching algorithms is performed, and a group of algorithms is…

Machine Learning · Computer Science 2021-03-24 Miia Rantala , Hannu Niemistö , Tommi Karhela , Seppo Sierla , Valeriy Vyatkin
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