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The regular polyhedra have the highest order of 3D symmetries and are exceptionally at- tractive templates for (self)-assembly using minimal types of building blocks, from nano-cages and virus capsids to large scale constructions like glass…

Computational Geometry · Computer Science 2015-07-31 Muhibur Rasheed , Chandrajit Bajaj

A self-organization is an universal phenomenon in nature and, in particular, is highly important in materials systems and biology. We proposed a new theory that allowed us to model the most challenging cases of atomic self-assembling whose…

Other Condensed Matter · Physics 2014-11-25 M. Lavrskyi , H. Zapolsky , A. G. Khachaturyan

A new algorithm, "HiER-leap", is derived which improves on the computational properties of the ER-leap algorithm for exact accelerated simulation of stochastic chemical kinetics. Unlike ER-leap, HiER-leap utilizes a hierarchical or…

Molecular Networks · Quantitative Biology 2012-12-18 David Orendorff , Eric Mjolsness

Recent decades have seen the discovery of numerous complex materials. At the root of the complexity underlying many of these materials lies a large number of possible contending atomic- and larger-scale configurations and the intricate…

Materials Science · Physics 2023-01-30 P. Ronhovde , S. Chakrabarty , M. Sahu , K. K. Sahu , K. F. Kelton , N. Mauro , Z. Nussinov

We face a need of discovering a pattern in locations of a great number of points in a high-dimensional space. Goal is to group the close points together. We are interested in a hierarchical structure, like a B-tree. B-Trees are…

Data Structures and Algorithms · Computer Science 2016-07-19 Victor Sadikov , Oliver Rutishauser

In order to optimize a self-assembly reaction, it is essential to understand the factors that govern its pathway. Here, we examine the influence of nucleation pathways in a model system for addressable, multicomponent self-assembly based on…

Soft Condensed Matter · Physics 2018-08-01 Martin Sajfutdinow , William M. Jacobs , Aleks Reinhardt , Christoph Schneider , David M. Smith

This paper proposes a methodology for architecting microstructures with extremal stiffness, yield, and buckling strength using topology optimization. The optimized microstructures reveal an interesting transition from simple lattice like…

Computational Engineering, Finance, and Science · Computer Science 2023-04-17 Fengwen Wang , Ole Sigmund

Complex crystal structures are composed of multiple local environments, and how this type of order emerges spontaneously during crystal growth has yet to be fully understood. We study crystal growth across various structures and along…

Soft Condensed Matter · Physics 2024-06-03 Maya M. Martirossyan , Matthew Spellings , Hillary Pan , Julia Dshemuchadse

Advances in manufacturing techniques may now realize virtually any imaginable microstructures, paving the way for architected materials with properties beyond those found in nature. This has lead to a quest for closing gaps in…

Materials Science · Physics 2020-11-10 Morten N. Andersen , Fengwen Wang , Ole Sigmund

Biological systems exploit self-assembly to create complex structures whose arrangements are finely controlled from molecular to mesoscopic level. Herein we report an example of using fully synthetic systems that mimic two levels of…

Active fluids, such as cytoskeletal filaments, bacterial colonies and epithelial cell layers, exhibit distinctive orientational coherence, often characterized by nematic order and topological defects. By contrast, little is known about…

Soft Condensed Matter · Physics 2021-04-07 Mattia Serra , Linnea Lemma , Luca Giomi , Zvonimir Dogic , L. Mahadevan

Chitin is one of the most abundant biomaterials in nature, with 10^10 tons produced annually as hierarchically organized nanofibril fillers to reinforce the exoskeletons of arthropods. This green and cheap biomaterial has attracted great…

Soft Condensed Matter · Physics 2016-03-25 Dongyeop X. Oh , Yun Jeong Cha , Hoang-Linh Nguyen , Hwa Heon Je , Yong Seok Jho , Dong Soo Hwang , Dong Ki Yoon

Multi-stable mechanical structures find cutting-edge applications across various domains due to their reconfigurability, which offers innovative possibilities for engineering and technology advancements. This study explores the emergence of…

Applied Physics · Physics 2024-02-13 Zhen Wang , Feiyang Sun , Xiaodong Xu , Xin Li , Chuanqing Chen , Minghui Lu

Peptides are recognized for their varied self-assembly behaviors, forming a wide array of structures and geometries, such as spheres, fibers, and hydrogels, each presenting a unique set of material properties. The functionalities of these…

Biomolecules · Quantitative Biology 2025-05-15 Sarah K. Yorke , Zhenze Yang , Aviad Levin , Alice Ray , Jeremy Owusu Boamah , Tuomas P. J. Knowles , Markus J. Buehler

The tremendous increase in the size and heterogeneity of supercomputers makes it very difficult to predict the performance of a scheduling algorithm. Therefore, dynamic solutions, where scheduling decisions are made at runtime have…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-04-16 Olivier Beaumont , Loris Marchal

Autonomous locomotion is a ubiquitous phenomenon in biology and in physics of active systems at microscopic scale. This includes prokaryotic, eukaryotic cells (crawling and swimming) and artificial swimmers. An outstanding feature is the…

Soft Condensed Matter · Physics 2021-12-24 A. Farutin , M. S. Rizvi , W. F. Hu , T. S. Lin , S. Rafai , C. Misbah

Planning and control for autonomous vehicles usually are hierarchical separated. However, increasing performance demands and operating in highly dynamic environments requires an frequent re-evaluation of the planning and tight integration…

Systems and Control · Electrical Eng. & Systems 2022-03-29 Markus Koegel , Mohamed Ibrahim , Christian Kallies , Rolf Findeisen

We present a theory for the toughness, damage tolerance, and tensile strength of a class of hierarchical, fractal, metamaterials. We show that the even though the absolute toughness and damage tolerance decrease with increasing number of…

Materials Science · Physics 2016-11-08 Ashivni Shekhawat

We use the Dynamic Density-Functional Formalism and the Fundamental Measure Theory as applied to a fluid of parallel hard squares to study the dynamics of heterogeneous growth of non-uniform phases with columnar and crystalline symmetries.…

Soft Condensed Matter · Physics 2022-06-07 Miguel Gonzalez-Pinto , Yuri Martinez-Raton , Enrique Velasco

Active materials are capable of converting free energy into directional motion, giving rise to striking dynamical phenomena. Developing a general understanding of their structure in relation to the underlying non-equilibrium physics would…

Soft Condensed Matter · Physics 2018-10-17 Nitin Kumar , Rui Zhang , Juan J. de Pablo , Margaret L. Gardel
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