Related papers: Simpler and Faster Lempel Ziv Factorization
We prove that longest common prefix (LCP) information can be stored in much less space than previously known. More precisely, we show that in the presence of the text and the suffix array, o(n) additional bits are sufficient to answer…
While existing algorithms may be used to solve a linear system over a general field in matrix-multiplication time, the complexity of constructing a symmetric triangular factorization (LDL) has received relatively little formal study. The…
We present a fast algorithm for modular exponentiation when the factorization of the modulus is known. Let $a,n,m$ be positive integers and suppose $m$ factors canonically as $\prod_{i=1}^k p_i^{e_i}$. Choose integer parameters $t_i\in [1,…
Domains like bioinformatics, version control systems, collaborative editing systems (wiki), and others, are producing huge data collections that are very repetitive. That is, there are few differences between the elements of the collection.…
Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
The suffix array is a data structure that finds numerous applications in string processing problems for both linguistic texts and biological data. It has been introduced as a memory efficient alternative for suffix trees. The suffix array…
This paper considers fast algorithms for operations on linearized polynomials. We propose a new multiplication algorithm for skew polynomials (a generalization of linearized polynomials) which has sub-quadratic complexity in the polynomial…
In today's data-centric world, fast and effective compression of data is paramount. To measure success towards the second goal, Kempa and Prezza [STOC2018] introduce the string attractor, a combinatorial object unifying dictionary-based…
This paper delves into recent hardware implementations of the Lempel-Ziv 4 (LZ4) algorithm, highlighting two key factors that limit the throughput of single-kernel compressors. Firstly, the actual parallelism exhibited in single-kernel…
The pressing need for eficient compression schemes for XML documents has recently been focused on stack computation [6, 9], and in particular calls for a formulation of information-lossless stack or pushdown compressors that allows a formal…
In this paper we present a simple linear-time algorithm constructing a context-free grammar of size O(g log(N/g)) for the input string, where N is the size of the input string and g the size of the optimal grammar generating this string.…
To store and search genomic databases efficiently, researchers have recently started building compressed self-indexes based on grammars. In this paper we show how, given a straight-line program with $r$ rules for a string (S [1..n]) whose…
In calculating integral or discrete transforms, use has been made of fast algorithms for multiplying vectors by matrices whose elements are specified as values of special (Chebyshev, Legendre, Laguerre, etc.) functions. The currently…
A method of fast linear transform algorithm synthesis for an arbitrary tensor, matrix, or vector is proposed. The method is based on factorization of a tensor and using the factors for building computational structures performing fast…
We propose a novel factorization algorithm that leverages the theory underlying the SQUFOF method, including reduced quadratic forms, infrastructural distance, and Gauss composition. We also present an analysis of our method, which has a…
In this paper, we study the general problem of optimizing a convex function $F(L)$ over the set of $p \times p$ matrices, subject to rank constraints on $L$. However, existing first-order methods for solving such problems either are too…
In this paper we present a new parsing algorithm for linear indexed grammars (LIGs) in the same spirit as the one described in (Vijay-Shanker and Weir, 1993) for tree adjoining grammars. For a LIG $L$ and an input string $x$ of length $n$,…
Polynomial factorization over $ZZ$ is of great historical and practical importance. Currently, the standard technique is to factor the polynomial over finite fields first and then to lift to integers. Factorization over finite fields can be…
Lempel-Ziv complexity (LZ) [1] and its variants have been used widely to identify non-random patterns in biomedical signals obtained across distinct physiological states. Non-random signatures of the complexity measure can occur under…