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We study the model of a partially directed flexible or semi-flexible homopolymer on a square lattice, subject to an externally applied force, in a direction either parallel to, or perpendicular to the preferred direction. The polymer is…

Statistical Mechanics · Physics 2015-05-19 Pui-Man Lam , Yi Zhen

The conformations of interacting linear polymers on a dynamical planar random lattice are studied using a random two-matrix model. An exact expression for the partition function of self-avoiding chains subject to attractive contact…

Condensed Matter · Physics 2008-02-03 Simon Dalley

A simple model of a polymer with long rigid segments which interact via excluded volume repulsions and short ranged attractions is proposed. The coil-globule transition of this model polymer is strongly first order, the globule is…

Soft Condensed Matter · Physics 2009-10-30 Richard P. Sear

We study the phase transitions of a random copolymer chain with quenched disorder. We apply a replica variational approach based on a Gaussian trial Hamiltonian in terms of the correlation functions of monomer Fourier coordinates. This…

Disordered Systems and Neural Networks · Physics 2009-10-30 A. Moskalenko , Yu. A. Kuznetsov , K. A. Dawson

We discuss variational formulas for the limits of certain models of motion in a random medium: namely, the limiting time constant for last-passage percolation and the limiting free energy for directed polymers. The results are valid for…

Probability · Mathematics 2016-01-22 Nicos Georgiou , Firas Rassoul-Agha , Timo Seppäläinen

We consider a directed walk model of a homopolymer (in two dimensions) which is self-interacting and can undergo a collapse transition, subject to an applied tensile force. We review and interpret all the results already in the literature…

Statistical Mechanics · Physics 2009-11-13 R. Brak , P. Dyke , J. Lee , A. L. Owczarek , T. Prellberg , A. Rechnitzer , S. G. Whittington

In earlier work we provided the first evidence that the collapse, or coil-globule, transition of an isolated polymer in solution can be seen in a four-dimensional model. Here we investigate, via Monte Carlo simulations, the canonical…

Statistical Mechanics · Physics 2009-10-31 T. Prellberg , A. L. Owczarek

This paper considers an undirected polymer chain on $\mathbb{Z}^d$, $d \geq 2$, with i.i.d.\ random charges attached to its constituent monomers. Each self-intersection of the polymer chain contributes an energy to the interaction…

Mathematical Physics · Physics 2018-02-14 Quentin Berger , Frank den Hollander , Julien Poisat

In this paper in terms of the replica method we consider the high temperature limit of (2+1) directed polymers in a random potential and propose an approach which allows to compute the scaling exponent $\theta$ of the free energy…

Statistical Mechanics · Physics 2021-08-11 Victor Dotsenko , Boris Klumov

The directed polymer in a 1+3 dimensional random medium is known to present a disorder-induced phase transition. For a polymer of length $L$, the high temperature phase is characterized by a diffusive behavior for the end-point displacement…

Disordered Systems and Neural Networks · Physics 2007-05-23 Cecile Monthus , Thomas Garel

Using exact enumeration methods and Monte Carlo simulations we study the phase diagram relative to the conformational transitions of a two dimensional diblock copolymer. The polymer is made of two homogeneous strands of monomers of…

Statistical Mechanics · Physics 2009-10-31 Marco Baiesi , Enrico Carlon , Enzo Orlandini , Attilio L. Stella

The nature of the globule-coil transition of surface-confined polymers has been an issue of debate. Here this 2D collapse transition is studied through a partially directed lattice model. In the general case of polymers with positive…

Soft Condensed Matter · Physics 2007-05-23 Haijun Zhou , Jie Zhou , Zhong-Can Ou-Yang , Sanjay Kumar

Trails (bond-avoiding walks) provide an alternative lattice model of polymers to self-avoiding walks, and adding self-interaction at multiply visited sites gives a model of polymer collapse. Recently, a two-dimensional model (triangular…

Statistical Mechanics · Physics 2013-02-01 Andrea Bedini , Aleksander L Owczarek , Thomas Prellberg

By means of Metropolis Monte Carlo simulations of a coarse-grained model for flexible polymers, we investigate how the integrated autocorrelation times of different energetic and structural quantities depend on the temperature. We show…

Computational Physics · Physics 2014-08-19 Kai Qi , Michael Bachmann

In this paper, we study the free energy of the directed polymer on a cylinder of radius $L$ with the inverse temperature $\beta$. Assuming the random environment is given by a Gaussian process that is white in time and smooth in space, with…

Probability · Mathematics 2023-02-13 Éric Brunet , Yu Gu , Tomasz Komorowski

A variational approach, based on a discrete representation of the chain, is used to calculate free energy and conformational properties in polyelectrolytes. The true bond and Coulomb potentials are approximated by a trial isotropic harmonic…

chem-ph · Physics 2016-08-15 B. Jönsson , C. Peterson , B. Söderberg

We have studied the transition in shape of two dimensional polyampholytes using Monte Carlo simulation. We observe that polymers with randomly charged monomers get into a globular shape at lower temperatures, provided that their total…

Condensed Matter · Physics 2007-05-23 M. R. Ejtehadi , S. Rouhani

We study the directed polymer of length $t$ in a random potential with fixed endpoints in dimension 1+1 in the continuum and on the square lattice, by analytical and numerical methods. The universal regime of high temperature $T$ is…

Disordered Systems and Neural Networks · Physics 2015-05-18 Pasquale Calabrese , Pierre Le Doussal , Alberto Rosso

We present a numerical Monte Carlo analysis of a continuos spin Ising chain that can describe the statistical proterties of folded proteins. We find that depending on the value of the Metropolis temperature, the model displays the three…

Statistical Mechanics · Physics 2011-02-01 M. N. Chernodub , Martin Lundgren , Antti J. Niemi

In this paper we study a two-dimensional directed self-avoiding walk model of a random copolymer in a random emulsion. The copolymer is a random concatenation of monomers of two types, $A$ and $B$, each occurring with density 1/2. The…

Probability · Mathematics 2009-11-13 Frank den Hollander , Nicolas Pétrélis
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