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Genome sequence alignment is the core of many biological applications. The advancement of sequencing technologies produces a tremendous amount of data, making sequence alignment a critical bottleneck in bioinformatics analysis. The existing…

Hardware Architecture · Computer Science 2023-01-26 Weihong Xu , Saransh Gupta , Niema Moshiri , Tajana Rosing

(Abridged) We have developed a numerical software library for collisionless N-body simulations named "Phantom-GRAPE" which highly accelerates force calculations among particles by use of a new SIMD instruction set extension to the x86…

Instrumentation and Methods for Astrophysics · Physics 2015-06-04 Ataru Tanikawa , Kohji Yoshikawa , Keigo Nitadori , Takashi Okamoto

The proliferation of high-throughput sequencing machines ensures rapid generation of up to billions of short nucleotide fragments in a short period of time. This massive amount of sequence data can quickly overwhelm today's storage and…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-13 Subho S. Banerjee , Mohamed El-Hadedy , Jong Bin Lim , Zbigniew T. Kalbarczyk , Deming Chen , Steve Lumetta , Ravishankar K. Iyer

The Number Theoretic Transform (NTT) is a fundamental operation in privacy-preserving technologies, particularly within fully homomorphic encryption (FHE). The efficiency of NTT computation directly impacts the overall performance of FHE,…

Hardware Architecture · Computer Science 2025-07-18 George Alexakis , Dimitrios Schoinianakis , Giorgos Dimitrakopoulos

Efficient ordinary differential equation solvers for chemical kinetics must take into account the available thread and instruction-level parallelism of the underlying hardware, especially on many-core coprocessors, as well as the numerical…

Computational Physics · Physics 2018-03-28 Christopher P. Stone , Andrew T. Alferman , Kyle E. Niemeyer

Xilinx's AI Engine is a recent industry example of energy-efficient vector processing that includes novel support for 2D SIMD datapaths and shuffle interconnection network. The current approach to programming the AI Engine relies on a C/C++…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-03 Prasanth Chatarasi , Stephen Neuendorffer , Samuel Bayliss , Kees Vissers , Vivek Sarkar

In recent years, the data collected for artificial intelligence has grown to an unmanageable amount. Particularly within industrial applications, such as autonomous vehicles, model training computation budgets are being exceeded while model…

Computer Vision and Pattern Recognition · Computer Science 2024-09-24 Maying Shen , Nadine Chang , Sifei Liu , Jose M. Alvarez

Approximate query processing (AQP) is an interesting alternative for exact query processing. It is a tool for dealing with the huge data volumes where response time is more important than perfect accuracy (this is typically the case during…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-11 Witold Andrzejewski , Artur Gramacki , Jarosław Gramacki

Recently Arm introduced a new instruction set called Scalable Vector Extension (SVE), which supports vector lengths up to 2048 bits. While SVE hardware will not be generally available until about 2021, we believe that future SVE-based…

High Energy Physics - Lattice · Physics 2019-04-09 Nils Meyer , Dirk Pleiter , Stefan Solbrig , Tilo Wettig

We present the APE (Array Processor Experiment) project for the development of dedicated parallel computers for numerical simulations in lattice gauge theories. While APEmille is a production machine in today's physics simulations at…

Operations typically used in machine learning al-gorithms (e.g. adds and soft max) can be implemented bycompact analog circuits. Analog Application-Specific Integrated Circuit (ASIC) designs that implement these algorithms using techniques…

Neural and Evolutionary Computing · Computer Science 2021-06-24 Shih-Chii Liu , John Paul Strachan , Arindam Basu

Vector processing has become commonplace in today's CPU microarchitectures. Vector instructions improve performance and energy which is crucial for resource-constraint mobile devices. The research community currently lacks a comprehensive…

Hardware Architecture · Computer Science 2023-09-07 Alireza Khadem , Daichi Fujiki , Nishil Talati , Scott Mahlke , Reetuparna Das

The ever-increasing quest for data-level parallelism and variable precision in ubiquitous multimedia and Deep Neural Network (DNN) applications has motivated the use of Single Instruction, Multiple Data (SIMD) architectures. To alleviate…

Hardware Architecture · Computer Science 2020-11-03 Zahra Ebrahimi , Salim Ullah , Akash Kumar

Building on the previous work of Lee et al. and Ferdinand et al. on coded computation, we propose a sequential approximation framework for solving optimization problems in a distributed manner. In a distributed computation system, latency…

Information Theory · Computer Science 2017-10-26 Jingge Zhu , Ye Pu , Vipul Gupta , Claire Tomlin , Kannan Ramchandran

The eigenvalue decomposition (EVD) of (a batch of) Hermitian matrices of order two has a role in many numerical algorithms, of which the one-sided Jacobi method for the singular value decomposition (SVD) is the prime example. In this paper…

Numerical Analysis · Mathematics 2023-10-31 Vedran Novaković

Deep Learning (DL) algorithms are the central focus of modern machine learning systems. As data volumes keep growing, it has become customary to train large neural networks with hundreds of millions of parameters to maintain enough capacity…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-03 Beidi Chen , Tharun Medini , James Farwell , Sameh Gobriel , Charlie Tai , Anshumali Shrivastava

This study presents the Cartesian Accumulative Matrix Pipeline (CAMP) architecture, a novel approach designed to enhance matrix multiplication in Vector Architectures (VAs) and Single Instruction Multiple Data (SIMD) units. CAMP improves…

The support vector machines (SVM) is one of the most widely used and practical optimization based classification models in machine learning because of its interpretability and flexibility to produce high quality results. However, the big…

Machine Learning · Computer Science 2020-11-06 Ehsan Sadrfaridpour , Korey Palmer , Ilya Safro

Stencil computation is one of the most important kernels in various scientific and engineering applications. A variety of work has focused on vectorization and tiling techniques, aiming at exploiting the in-core data parallelism and data…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-19 Kun Li , Liang Yuan , Yunquan Zhang , Yue Yue , Hang Cao , Pengqi Lu

The growing demand for edge-AI systems requires arithmetic units that balance numerical precision, energy efficiency, and compact hardware while supporting diverse formats. Posit arithmetic offers advantages over floating- and fixed-point…

Hardware Architecture · Computer Science 2026-01-27 Sonu Kumar , Lavanya Vinnakota , Mukul Lokhande , Santosh Kumar Vishvakarma , Adam Teman