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MicroRNAs are extensively known for post-transcriptional gene regulation and pattern formation in the embryonic developmental stage. We explore the origin of these spatio-temporal patterns mathematically, considering three different motifs…

Quantitative Methods · Quantitative Biology 2023-07-19 Priya Chakraborty , Sayantari Ghosh

Cortical slow oscillations are an emergent property of the cortical network, a hallmark of low complexity brain states like sleep, and represent a default activity pattern. Here, we present a methodological approach for quantifying the…

Neurons and Cognition · Quantitative Biology 2021-11-09 Giulia De Bonis , Miguel Dasilva , Antonio Pazienti , Maria V. Sanchez-Vives , Maurizio Mattia , Pier Stanislao Paolucci

We propose a generic uncertainty relationship for cross-diffusion (quasi-soliton) waves triggered by local instabilities through Thermo-Hydro-Mechano-Chemical (THMC) coupling and cross-scale feedbacks. Cross-diffusion waves nucleate when…

Pattern Formation and Solitons · Physics 2019-07-26 Klaus Regenauer-Lieb , Manman Hu , Christoph Schrank

Migraine (MGR) ranks first among diseases in terms of years of lost healthy life in young adult and adult women. Currently, there is no theory of MGR. This paper presents a complete theory of migraine that explains its etiology, symptoms,…

Neurons and Cognition · Quantitative Biology 2024-08-14 Ari Rappoport

Subdiffusion is a hallmark of complex systems, ranging from protein folding to transport in viscoelastic media. However, despite its pervasiveness, the mechanistic origins of subdiffusion remain contested. Here, we analyze both Markovian…

Soft Condensed Matter · Physics 2025-06-04 Anton Klimek , Benjamin A. Dalton , Roland R. Netz

Differential equation-based physiological models of sleep-wake networks describe sleep-wake regulation by simulating the activity of wake- and sleep-promoting neuronal populations and the modulation of these populations by homeostatic and…

Dynamical Systems · Mathematics 2021-11-16 Christina Athanasouli , Sofia H. Piltz , Cecilia Diniz Behn , Victoria Booth

Little is currently known about the coordination of neural activity over longitudinal time-scales and how these changes relate to behavior. To investigate this issue, we used resting-state fMRI data from a single individual to identify the…

Neurons and Cognition · Quantitative Biology 2017-05-30 James M. Shine , Oluwasanmi Koyejo , Russell A. Poldrack

We investigate the stability and nonlinear local dynamics of spectrally stable wave trains in reaction-diffusion systems. For each $N\in\mathbb{N}$, such $T$-periodic traveling waves are easily seen to be nonlinearly asymptotically stable…

Analysis of PDEs · Mathematics 2021-04-28 Mathew A. Johnson , Wesley R. Perkins

In many oscillatory or excitable systems, dynamical patterns emerge which are stationary or periodic up in a moving frame of reference. Examples include traveling waves or spiral waves in chemical systems or cardiac tissue. We present a…

Pattern Formation and Solitons · Physics 2019-03-06 Hans Dierckx , Alexander V. Panfilov , Henri Verschelde , Vadim N. Biktashev , Irina V. Biktasheva

In the mean-field theory of magnetic fields, turbulent transport, i.e. the turbulent electromotive force, is described by a combination of the alpha effect and turbulent magnetic diffusion, which are usually assumed to be proportional…

Astrophysics · Physics 2009-11-13 Alexander Hubbard , Axel Brandenburg

Formation of diverse patterns in spatially extended reaction-diffusion systems is an important aspect of study which is pertinent to many chemical and biological processes. Of special interest is the peculiar phenomenon of chimera state…

Adaptation and Self-Organizing Systems · Physics 2021-06-16 Srilena Kundu , Paulsamy Muruganandam , Dibakar Ghosh , M. Lakshmanan

We study a model for the depinning and driven steady state phases of a solid tuned across a polymorphic phase transition between ground states of triangular and square symmetry. These include pinned states which may have dominantly…

Superconductivity · Physics 2015-05-14 Ankush Sengupta , Surajit Sengupta , Gautam I. Menon

The appearence of long-range correlations near the Dirac point of a Dirac-like spinor model with random vector potential is studied. These correlations originate from a spontaneously broken symmetry and their corresponding Goldstone modes.…

Mesoscale and Nanoscale Physics · Physics 2008-09-04 K. Ziegler

The brain encodes external stimuli through patterns of neural activity, forming internal representations of the world. Recent experiments show that neural representations for a given stimulus change over time. However, the mechanistic…

Neurons and Cognition · Quantitative Biology 2024-12-19 Guillermo B. Morales , Miguel A. Muñoz , Yuhai Tu

We investigate electronic transport across a magnetic domain wall (DW) in a three-dimensional (3D) second-order topological insulator subject to Anderson disorder. In the clean limit, the DW hosts two co-propagating one-dimensional (1D)…

Mesoscale and Nanoscale Physics · Physics 2026-04-24 Dong Zhou , Zhe Hou

Strong effects of the Faraday instability on suspensions of rodlike colloidal particles are reported through measurements of the critical acceleration and of the surface wave amplitude. We show that the transition to parametrically excited…

Soft Condensed Matter · Physics 2013-01-30 Pierre Ballesta , M. Paul Lettinga , Sebastien Manneville

When the steady states at infinity become unstable through a pattern forming bifurcation, a travelling wave may bifurcate into a modulated front which is time-periodic in a moving frame. This scenario has been studied by B.Sandstede and…

Analysis of PDEs · Mathematics 2007-05-23 Thierry Gallay , Guido Schneider , Hannes Uecker

We examine the effects of a periodically varying flow velocity on the standing and travelling wave patterns formed by the flow-distributed oscillation (FDO) mechanism. In the kinematic (or diffusionless) limit, the phase fronts undergo a…

Pattern Formation and Solitons · Physics 2009-11-11 Patrick N. McGraw , Michael Menzinger

We present fully three-dimensional local MRI simulations with the object of studying the excitation of non-axisymmetric spiral density waves that are observed to always be present in such simulations. They are potentially important for…

Astrophysics · Physics 2015-05-13 T. Heinemann , J. C. B. Papaloizou

The motility of eukaryotic cells is strongly influenced by their environment, with confined cells often developing qualitatively different motility patterns from those migrating on simple two-dimensional substrates. Recent experiments,…

Cell Behavior · Quantitative Biology 2024-12-24 Pedrom Zadeh , Brian A. Camley