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200 papers

While modern physics and biology satisfactorily explain the passage from the Big Bang to the formation of Earth and the first cells to present-day life, respectively, the origins of biochemical life still remain an open question. Since…

Populations and Evolution · Quantitative Biology 2025-02-25 Praful Gagrani , David Baum

Vesicle fusion is an important process underlying cell division, transport, and membrane trafficking. In phospholipid systems, a range of fusogens including divalent cations and depletants have been shown to induce adhesion, hemifusion, and…

Soft Condensed Matter · Physics 2023-05-03 Ziyan Fan , Yaam Deckel , Lauren A. Lowe , Daniel W. K. Loo , Tetsuya Yomo , Jack W. Szostak , Collin Nisler , Anna Wang

Protocells are supposed to have played a key role in the self-organizing processes leading to the emergence of life. Existing models either (i) describe protocell architecture and dynamics, given the existence of sets of collectively…

Molecular Networks · Quantitative Biology 2014-08-01 Roberto Serra , Alessandro Filisetti , Marco Villani , Alex Graudenzi , Chiara Damiani , Tommaso Panini

A poorly understood step in the transition from a chemical to a biological world is the emergence of self-replicating molecular systems. We study how a precursor for such a replicator might arise in a hydrothermal RNA reactor, which…

Biomolecules · Quantitative Biology 2011-06-30 B. Obermayer , H. Krammer , D. Braun , U. Gerland

A microscopic model of the lipid membrane is constructed that provides analytically tractable description of the physical mechanism of the first order liquid-gel phase transition. We demonstrate that liquid-gel phase transition is…

Soft Condensed Matter · Physics 2018-07-04 Boris Kheyfets , Timur Galimzyanov , Sergei Mukhin

It has been hypothesized that in the era just before the last universal common ancestor emerged, life on earth was fundamentally collective. Ancient life forms shared their genetic material freely through massive horizontal gene transfer…

Populations and Evolution · Quantitative Biology 2015-11-18 Hinrich Arnoldt , Steven H. Strogatz , Marc Timme

We present results of three dimensional simulations of the uppermost part of the sun, at 3 stages of its evolution. Each model includes physically realistic radiative-hydrodynamics (the Eddington approximation is used in the optically thin…

Astrophysics · Physics 2007-05-23 F. J. Robinson , P. Demarque , S. Sofia , K. L. Chan , Y. -C. Kim , D. B. Guenther

This article summarizes a variety of physical mechanisms proposed in the literature, which can generate micro- and nanodomains in multicomponent lipid bilayers and biomembranes. It mainly focusses on lipid-driven mechanisms that do not…

Biological Physics · Physics 2016-11-16 Friederike Schmid

In the aftermath of the Moon-forming giant impact, the Hadean Earth's mantle and surface crystallized from a global magma ocean blanketed by a dense volatile-rich atmosphere. While prior studies have explored the thermal evolution of such…

Earth and Planetary Astrophysics · Physics 2026-03-31 Marijn R. van Dijk , Harrison Nicholls , Tim Lichtenberg

Low-gravity waterworlds ($M\lesssim 0.1 M_{\oplus}$) are of interest for their potential habitability. The weakly bound atmospheres of such worlds have proportionally larger radiative surfaces and are more susceptible to escape. We conduct…

Earth and Planetary Astrophysics · Physics 2019-08-15 Constantin W. Arnscheidt , Robin D. Wordsworth , Feng Ding

A minimalist simulation model for lipid bilayers is presented. Each lipid is represented by a flexible chain of beads in implicit solvent. The hydrophobic effect is mimicked through an intermolecular pair potential localized at the…

Statistical Mechanics · Physics 2009-11-11 Grace Brannigan , Peter F. Philips , Frank L. H. Brown

Based on the oligomer-world hypothesis we propose an abstract model where the molecular recognition among oligomers is described in the shape space. The origin of life in the oligomer world is regarded as the establishment of a metabolic…

Subcellular Processes · Quantitative Biology 2012-09-21 Tomoaki Nishio , Osamu Narikiyo

Water molecules play an important role in providing unique environments for biological reactions on cell membranes. It is widely believed that water molecules form bridges that connect lipid molecules and stabilize cell membranes. Using…

Biological Physics · Physics 2014-08-04 Eiji Yamamoto , Takuma Akimoto , Masato Yasui , Kenji Yasuoka

Combining extensive molecular dynamics simulations of lipid bilayer systems of varying chemical composition with single-trajectory analyses we systematically elucidate the stochastic nature of the lipid motion. We observe subdiffusion over…

Soft Condensed Matter · Physics 2015-06-11 Jae-Hyung Jeon , Hector Martinez-Seara Monne , Matti Javanainen , Ralf Metzler

The history of the Earth has been marked by major ecological transitions, driven by metabolic innovation, that radically reshaped the composition of the oceans and atmosphere. The nature and magnitude of the earliest transitions, hundreds…

Populations and Evolution · Quantitative Biology 2020-06-12 Boris Sauterey , Benjamin Charnay , Antonin Affholder , Stéphane Mazevet , Régis Ferrière

A key result of hydrogravitational dynamics cosmology relevant to astrobiology is the early formation of vast numbers of hot primordial-gas planets in million-solar-mass clumps as the dark matter of galaxies and the hosts of first life.…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-19 Carl H. Gibson , N. Chandra Wickramasinghe , Rudolph E. Schild

The Hadean, once thought to be uninhabitable and tumultuous, has more recently been recontextualized as a clement time in which oceans, land, and life likely appeared on Earth. This non-exhaustive chapter follows multiple threads from…

Earth and Planetary Astrophysics · Physics 2024-11-01 Christopher K Jones , Michaela Leung , Chenyi Tu , Saleheh Ebadirad , Nate Marshall , Lin Tan , Tim Lyons

According to the lipid raft hypothesis, biological lipid membranes are laterally heterogeneous and filled with nanoscale ordered "raft" domains, which are believed to play an important role for the organization of proteins in membranes.…

Biological Physics · Physics 2013-03-22 Sebastian Meinhardt , Richard L. C. Vink , Friederike Schmid

About 4 billion years ago, the Earth probably fulfilled the environmental conditions necessary to favour the transition from primitive chemistry to life. Based on a theoretical hairpin duplication origin of tRNAs and their putative…

Biological Physics · Physics 2025-01-27 Juan Jimenez

The origin of life is often framed primarily as a chemical problem, yet life's defining feature is evolution. Advances in geochemistry, prebiotic chemistry, and molecular biology have produced diverse scenarios for the emergence of genomes,…