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The famous Johnson-Nyquist formula relating noise current to conductance has a microscopic generalization relating noise current density to microscopic conductivity, with corollary relations governing noise in the components of the…

Computational Physics · Physics 2013-08-27 M. T. Homer Reid , Alejandro W. Rodriguez , Steven G. Johnson

Fluctuations and noise may alter the behavior of dynamical systems considerably. For example, oscillations may be sustained by demographic fluctuations in biological systems where a stable fixed point is found in the absence of noise. We…

Adaptation and Self-Organizing Systems · Physics 2009-11-13 Richard P. Boland , Tobias Galla , Alan J. McKane

Intrinsic fluctuations around the solution of the lattice Boltzmann equation are described or modeled by addition of a white Gaussian noise source. For stationary states a fluctuation-dissipation theorem relates the variance of the…

comp-gas · Physics 2008-02-03 J. W. Dufty , M. H. Ernst

The form of the fluctuation-dissipation theorem for a resistively shunted Josephson juction array is derived with the help of the method which explicitely takes into acoount screening effects. This result is used to express the flux noise…

Superconductivity · Physics 2009-11-07 S. E. Korshunov

The recent, unexpected, findings of upstream neutral modes in particle-like fractional quantum Hall states, led to a realization that the nature of the neutral modes is far from being understood. Moreover, the observation of spatially…

Noise affects the coherence of qubits and thereby places a bound on the performance of quantum computers. We theoretically study a generic two-level system with fluctuating control parameters in a photonic cavity and find that basic…

Mesoscale and Nanoscale Physics · Physics 2022-06-22 Philipp M. Mutter , Guido Burkard

The refined composite multiscale-entropy algorithm was applied to the time-dependent behavior of the Weierstrass functions, colored noise, and Logistic map to provide fresh insight into the dynamics of these fluctuating phenomena. For the…

Data Analysis, Statistics and Probability · Physics 2018-10-17 Jamieson Brechtl , Xie Xie , Karen A. Dahmen , Peter K. Liaw

We show how the semiclassical Langevin method can be extended to calculations of higher-than-second cumulants of noise. These cumulants are affected by indirect correlations between the fluctuations, which may be considered as "noise of…

Statistical Mechanics · Physics 2009-11-11 Kirill E. Nagaev

Bursting cells lead to ambient RNA that contaminates sequencing data. This process is especially problematic in perturbation experiments where transcription factors are implanted into cells to determine their effects. The presence of…

Quantitative Methods · Quantitative Biology 2023-09-21 Forrest Sheldon

The dual phosphorylation network provides an essential component of intracellular signaling, affecting the expression of phenotypes and cell metabolism. For particular choices of kinetic parameters, this system exhibits multistationarity, a…

Optimization and Control · Mathematics 2024-09-25 May Cai , Matthias Himmelmann , Birte Ostermann

We derive the effective action for superconducting fluctuations in a four-band model for pnictides, discussing the emergence of a single critical mode out of a dominant interband pairing mechanism. We then apply our model to calculate the…

Superconductivity · Physics 2009-06-01 L. Fanfarillo , L. Benfatto , S. Caprara , C. Castellani , M. Grilli

The activity generated by an ensemble of neurons is affected by various noise sources. It is a well-recognised challenge to understand the effects of noise on the stability of such networks. We demonstrate that the patterns of activity…

Analysis of PDEs · Mathematics 2022-05-19 Jose A. Carrillo , Helge Holden , Susanne Solem

The origin of the low-frequency noise with power spectrum $1/f^\beta$ (also known as $1/f$ fluctuations or flicker noise) remains a challenge. Recently, the nonlinear stochastic differential equations for modeling $1/f^\beta$ noise have…

Data Analysis, Statistics and Probability · Physics 2016-01-20 B. Kaulakys , M. Alaburda , J. Ruseckas

Noise, through its interaction with the nonlinearity of the living systems, can give rise to counter-intuitive phenomena such as stochastic resonance, noise-delayed extinction, temporal oscillations, and spatial patterns. In this paper we…

Populations and Evolution · Quantitative Biology 2007-05-23 B. Spagnolo , D. Valenti , A. Fiasconaro

We examine the weak noise limit of an overdamped dissipative system within a semiclassical description and show how quantization influences the growth and decay of fluctuations of the thermally equilibrated systems. We trace its origin in a…

Statistical Mechanics · Physics 2009-10-31 Bidhan Chandra Bag , Deb Shankar Ray

We examine classical, transient fluctuation theorems within the unifying framework of Langevin dynamics. We explicitly distinguish between the effects of non-conservative forces that violate detailed balance, and non-autonomous dynamics…

Statistical Mechanics · Physics 2009-11-11 Vladimir Y. Chernyak , Michael Chertkov , Christopher Jarzynski

In signal integrity analysis, the joint effect of propagated noise through library cells, and of the noise injected on a quiet net by neighboring switching nets through coupling capacitances, must be considered in order to accurately…

Hardware Architecture · Computer Science 2011-11-09 Cristiano Forzan , Davide Pandini

Biological systems (among others) may respond to a large variety of distinct external stimuli, or signals. These perturbations will generally be presented to the system not singly, but in various combinations, so that a proper understanding…

Quantitative Methods · Quantitative Biology 2011-06-24 Dennis Wylie

Dual phospho/dephosphorylation cycles, as well as covalent enzymatic-catalyzed modifications of substrates, are widely diffused within cellular systems and are crucial for the control of complex responses such as learning, memory and…

Biological Physics · Physics 2015-05-28 A. Bazzani , G. Castellani , E. Giampieri , D. Remondini , L. N Cooper

Based on a recently proposed non-equilibrium mechanism for spatial pattern formation [cond-mat/0312366] we study how morphogenesis can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of…

Molecular Networks · Quantitative Biology 2007-05-23 Thimo Rohlf , Stefan Bornholdt