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Related papers: Diffusion wave and signal transduction in biologic…

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Diffusion-encoded magnetic resonance (MR) experiments can provide important insights into the microstructural characteristics of a variety of biological tissues and other fluid- or gas-filled porous media. The physics of diffusion encoding…

Medical Physics · Physics 2021-09-30 Justin P. Haldar

In this work, we consider diffusion-based molecular communication with and without drift between two static nano-machines. We employ type-based information encoding, releasing a single molecule per information bit. At the receiver, we…

Information Theory · Computer Science 2018-07-13 Werner Haselmayr , Neeraj Varshney , A. Taufiq Asyhari , Andreas Springer , Weisi Guo

Building Virtual Cells that can accurately simulate cellular responses to perturbations is a long-standing goal in systems biology. A fundamental challenge is that high-throughput single-cell sequencing is destructive: the same cell cannot…

Machine Learning · Computer Science 2026-02-24 Xinyu Yuan , Xixian Liu , Ya Shi Zhang , Zuobai Zhang , Hongyu Guo , Jian Tang

Biological cells sense and respond to mechanical forces, but how such a mechanosensing proccess takes place in a nonlinear inhomogeneous fibrous matrix remains unknown. We show that cells in a fibrous matrix induce deformation fields that…

Biological Physics · Physics 2015-06-10 Jacob Notbohm , Ayelet Lesman , Phoebus Rosakis , David A. Tirrell , Guruswami Ravichandran

The emission of thermal radiation is a physical process of fundamental and technological interest. From different approaches, thermal radiation can be regarded either as one of the basic mechanisms of heat transfer, as a fundamental quantum…

Optics · Physics 2024-01-19 J. Enrique Vázquez-Lozano , Iñigo Liberal

Modeling radio frequency (RF) signal propagation is essential for understanding the environment, as RF signals offer valuable insights beyond the capabilities of RGB cameras, which are limited by the visible-light spectrum, lens coverage,…

Machine Learning · Computer Science 2025-10-07 Kyoungjun Park , Yifan Yang , Changhan Ge , Lili Qiu , Shiqi Jiang

We propose a modeling approach to study how mature biofilms spread and colonize new surfaces by predicting the formation and growth of satellite colonies generated by dispersing biofilms. This model provides the basis for better…

Biological Physics · Physics 2017-12-14 Andrea Trucchia , Federica Villa , Luigi Frunzo , Gianni Pagnini

The manner in which signals propagate through dense granular systems in both space and time is not well understood. In order to learn more about this process, we carry out discrete element simulations of the system response to excitations…

Soft Condensed Matter · Physics 2008-05-15 L. Kondic , O. M. Dybenko , R. P. Behringer

Elastic wave dispersion is studied in an octet truss lattice and compared with a designed rib lattice known to exhibit strong Cosserat elastic effects. Dispersion entails variation of wave speed with frequency. The phenomenon is…

Materials Science · Physics 2026-04-27 K. Goyal , R. S. Lakes

A conditional diffusion model has been developed to analyze intricate conductance fluctuations called universal conductance fluctuations or quantum fingerprints appearing in quantum transport phenomena. The model reconstructs impurity…

Mesoscale and Nanoscale Physics · Physics 2025-06-11 Naoto Yokoi , Yuki Tanaka , Yukito Nonaka , Shunsuke Daimon , Junji Haruyama , Eiji Saitoh

Cell spreading is investigated at various scales in order to understand motility of living cells which is essential for a range of physiological activities in higher organisms as well as in microbes. At a microscopic scale, it has been seen…

Cell Behavior · Quantitative Biology 2009-11-13 A. Bhattacharyay

We report the observation of nonexponential decay of pulsed microwave transmission through quasi-one-dimensional random dielectric media that signals the breakdown of the diffusion model of transport for temporally coherent extended waves.…

Disordered Systems and Neural Networks · Physics 2009-11-07 A. A. Chabanov , Z. Q. Zhang , A. Z. Genack

In non-destructive and biomedical imaging, spatial patterns inside a sample are imaged without destroying it. Therefore, propagating waves, including electromagnetic or ultrasonic signals, or even diffuse heat are generated or modified by…

Applied Physics · Physics 2025-07-09 Peter Burgholzer , Lukas Gahleitner , Guenther Mayr

Biological learning achieves temporal credit assignment despite sparse and imprecise feedback, often relying on neuromodulatory signals acting over space and time. Here, we introduce a learning mechanism in which error information diffuses…

Neurons and Cognition · Quantitative Biology 2026-03-11 João Barretto-Bittar , Anna Levina , Emmanouil Giannakakis , Roxana Zeraati

The movement of molecules inside living cells is a fundamental feature of biological processes. The ability to both observe and analyse the details of molecular diffusion in vivo at the single molecule and single cell level can add…

Quantitative Methods · Quantitative Biology 2012-11-21 Alex Robson , Kevin Burrage , Mark Leake

Scanning Transmission Electron Microscopy (STEM) is a critical tool for imaging the properties of materials and biological specimens at atomic scale, yet our understanding of relevant electron beam damage mechanisms is incomplete. Recent…

Signal Processing · Electrical Eng. & Systems 2025-07-02 Amir Javadi Rad , Amirafshar Moshtaghpour , Dongdong Chen , Angus I. Kirkland

Mathematical modeling is now used commonly in the analysis of signaling networks. With advances in high resolution microscopy, the spatial location of different signaling molecules and the spatio-temporal dynamics of signaling microdomains…

Subcellular Processes · Quantitative Biology 2016-07-26 Jasmine Nirody , Padmini Rangamani

The propagation of waves in soft dielectric elastomer layers is investigated. To this end incremental motions superimposed on homogeneous finite deformations induced by bias electric fields and pre-stretch are determined. First we examine…

Soft Condensed Matter · Physics 2011-11-22 Gal Shmuel , Massimiliano Gei , Gal deBotton

By measuring the transmission of near-resonant light through an atomic vapor confined in a nano-cell we demonstrate a mesoscopic optical response arising from the non-locality induced by the motion of atoms with a phase coherence length…

We study the behavior of wave propagation in materials for which not all of the principle elements of the permeability and permittivity tensors have the same sign. We find that a wide variety of effects can be realized in such media,…

Materials Science · Physics 2009-11-07 D. R. Smith , D. Schurig
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