Related papers: The Theory of Pseudoknots
The contents of this 6-page paper have been subsumed into the 13-page paper, "A note on closed 3-braids", arXiv:0802.1072 [math.GT]. This paper is correct, but contains less information than the new one. The topological classification of…
Let $F$ be a family of pseudo-disks in the plane, and $P$ be a finite subset of $F$. Consider the hypergraph $H(P,F)$ whose vertices are the pseudo-disks in $P$ and the edges are all subsets of $P$ of the form $\{D \in P \mid D \cap S \neq…
We study collections of planar curves that yield diagrams for all knots. In particular, we show that a very special class called potholder curves carries all knots. This has implications for realizing all knots and links as special types of…
We introduce a method of computing biquandle brackets of oriented knots and links using a type of decorated trivalent spatial graphs we call trace diagrams. We identify algebraic conditions on the biquandle bracket coefficients for moving…
Knot and link diagrams are projections of one or more 3-dimensional simple closed curves into $R^2$, such that no more than two points project to the same point in $R^2$. These diagrams are drawings of 4-regular plane multigraphs. Knots are…
The primary objects of study in the ``knot theory of complex plane curves'' are C-links: links (or knots) cut out of a 3-sphere in the complex plane by complex plane transverse and totally tangential. Transverse C-links are naturally…
It is well known that not every combinatorial configuration admits a geometric realization with points and lines. Moreover, some of them do not even admit realizations with pseudoline arrangements, i.e., they are not topological. In this…
The visibility graph of a simple polygon represents visibility relations between its vertices. Knowing the correct order of the vertices around the boundary of a polygon and its visibility graph, it is an open problem to locate the vertices…
We introduce a simple combinatorial way, which we call a rectangular diagram of a surface, to represent a surface in the three-sphere. It has a particularly nice relation to the standard contact structure on $\mathbb S^3$ and to rectangular…
The altenating knots, links and twists projected on the S_2 sphere are identified with the phase Space of a Hamiltonian dynamic system of one degree of freedom. The saddles of the system correspond to the crossing points, the edges, to the…
A k-noncrossing RNA pseudoknot structure is a graph over $\{1,...,n\}$ without 1-arcs, i.e. arcs of the form (i,i+1) and in which there exists no k-set of mutually intersecting arcs. In particular, RNA secondary structures are 2-noncrossing…
We explore pseudometrics for directed graphs in order to better understand their topological properties. The directed flag complex associated to a directed graph provides a useful bridge between network science and topology. Indeed, it has…
For a genus-1 1-bridge knot in the 3-sphere, that is, a (1,1)-knot, a middle tunnel is a tunnel that is not an upper or lower tunnel for some (1,1)-position. Most torus knots have a middle tunnel, and non-torus-knot examples were obtained…
The paper investigates the computational problem of predicting RNA secondary structures. The general belief is that allowing pseudoknots makes the problem hard. Existing polynomial-time algorithms are heuristic algorithms with no…
The concept of pseudo-distance-regularity around a vertex of a graph is a natural generalization, for non-regular graphs, of the standard distance-regularity around a vertex. In this note, we prove that a pseudo-distance-regular graph…
It is known that every surface-link can be presented by a marked graph diagram, and such a diagram presentation is unique up to moves called Yoshikawa moves. G. Kuperberg introduced a regular isotopy invariant, called the quantum A_2…
A powerful way to study groups is via their actions on suitable spaces. Classifying spaces for families of subgroups are a type of these spaces, obtained by imposing some strict conditions on the fixed-point sets. We show how in the…
In this paper, rough approximations of Cayley graphs are studied and rough edge Cayley graphs are introduced. Furthermore, a new algebraic definition called pseudo-Cayley graphs containing Cayley graphs is proposed. Rough approximation is…
A knot in the 3-sphere in genus-1 1-bridge position (called a (1,1)-position) can be described by an element of the braid group of two points in the torus. Our main results tell how to translate between a braid group element and the…
Both classical and virtual knots arise as formal Gauss diagrams modulo some abstract moves corresponding to Reidemeister moves. If we forget about both over/under crossings structure and writhe numbers of knots modulo the same Reidemeister…