Related papers: The motif problem
Network motif provides a way to uncover the basic building blocks of most complex networks. This task usually demands high computer processing, specially for motif with 5 or more vertices. This paper presents an extended methodology with…
Motivated by frequency assignment in office blocks, we study the chromatic number of the adjacency graph of $3$-dimensional parallelepiped arrangements. In the case each parallelepiped is within one floor, a direct application of the…
The identification of motifs--subgraphs that appear significantly more often in a particular network than in an ensemble of randomized networks--has become a ubiquitous method for uncovering potentially important subunits within networks…
In this paper we study geometric coincidence problems in the spirit of the following problems by B. Gr\"unbaum: How many affine diameters of a convex body in $\mathbb R^n$ must have a common point? How many centers (in some sense) of…
We study a family of pattern-detection problems in vertex-colored temporal graphs. In particular, given a vertex-colored temporal graph and a multiset of colors as a query, we search for temporal paths in the graph that contain the colors…
Determining the maximum number of edges in an intersecting hypergraph on a fixed ground set under additional constraints is one of the central topics in extremal combinatorics. In contrast, there are few results on analogous problems…
In this thesis we consider ordered graphs (that is, graphs with a fixed linear ordering on their vertices). We summarize and further investigations on the number of edges an ordered graph may have while avoiding a fixed forbidden ordered…
One fundamental problem in temporal graph analysis is to count the occurrences of small connected subgraph patterns (i.e., motifs), which benefits a broad range of real-world applications, such as anomaly detection, structure prediction,…
The maximum graph bisection problem is a well known graph partition problem. The problem has been proven to be NP-hard. In the maximum graph bisection problem it is required that the set of vertices is divided into two partition with equal…
The Graph Motif problem was introduced in 2006 in the context of biological networks. It consists of deciding whether or not a multiset of colors occurs in a connected subgraph of a vertex-colored graph. Graph Motif has been mostly analyzed…
Let $P$ be a set of at most $n$ points and let $R$ be a set of at most $n$ geometric ranges, such as for example disks or rectangles, where each $p \in P$ has an associated supply $s_{p} > 0$, and each $r \in R$ has an associated demand…
Frequent and structurally related subgraphs, also known as network motifs, are valuable features of many graph datasets. However, the high computational complexity of identifying motif sets in arbitrary datasets (motif mining) has limited…
A matching is compatible to two or more labeled point sets of size $n$ with labels $\{1,\dots,n\}$ if its straight-line drawing on each of these point sets is crossing-free. We study the maximum number of edges in a matching compatible to…
Planar point sets with many triple lines (which contain at least three distinct points of the set) have been studied for 180 years, started with Jackson and followed by Sylvester. Green and Tao has shown recently that the maximum possible…
Network motifs are recurrent, small-scale patterns of interactions observed frequently in a system. They shed light on the interplay between the topology and the dynamics of complex networks across various domains. In this work, we focus on…
Complex systems frequently exhibit multi-way, rather than pairwise, interactions. These group interactions cannot be faithfully modeled as collections of pairwise interactions using graphs and instead require hypergraphs. However, methods…
One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…
New bounds on the number of similar or directly similar copies of a pattern within a finite subset of the line or the plane are proved. The number of equilateral triangles whose vertices all lie within an $n$-point subset of the plane is…
Time-series motifs are representative subsequences that occur frequently in a time series; a motif set is the set of subsequences deemed to be instances of a given motif. We focus on finding motif sets. Our motivation is to detect motif…
Many real-world networks describe systems in which interactions decay with the distance between nodes. Examples include systems constrained in real space such as transportation and communication networks, as well as systems constrained in…