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We present an extension of Felsenstein's algorithm to indel models defined on entire sequences, without the need to condition on one multiple alignment. The algorithm makes use of a generalization from probabilistic substitution matrices to…

Populations and Evolution · Quantitative Biology 2014-10-24 Oscar Westesson , Gerton Lunter , Benedict Paten , Ian Holmes

In this paper we regard languages and their acceptors - such as deterministic or weighted automata, transducers, or monoids - as functors from input categories that specify the type of the languages and of the machines to categories that…

Logic in Computer Science · Computer Science 2023-06-22 Thomas Colcombet , Daniela Petrişan

State minimization is a fundamental problem in automata theory. The problem is also of great importance in the study of fuzzy automata. However, most work in the literature considered only state reduction of fuzzy automata, whereas the…

Formal Languages and Automata Theory · Computer Science 2013-05-21 Lvzhou Li , Daowen Qiu

Backwards reachability is an efficient zone-based approach for model checking probabilistic timed automata w.r.t. PTCTL properties. Current implementations, however, are restricted to maximum probabilities of reachability properties. In…

Logic in Computer Science · Computer Science 2022-08-26 Arnd Hartmanns , Bram Kohlen

We initiate a systematic study of utilizing predictions to improve over approximation guarantees of classic algorithms, without increasing the running time. We propose a systematic method for a wide class of optimization problems that ask…

Data Structures and Algorithms · Computer Science 2024-11-26 Antonios Antoniadis , Marek Eliáš , Adam Polak , Moritz Venzin

We show that the minimization of visibly pushdown automata is NP-complete. This result is obtained by introducing immersions, that recognize multiple languages (over a usual, non-visible alphabet) using a common deterministic transition…

Formal Languages and Automata Theory · Computer Science 2023-06-22 Olivier Gauwin , Anca Muscholl , Michael Raskin

This paper presents optimizations to improve the scalability of reachability analysis on a subclass of hybrid automata extended with stochasticity. The optimizations target different components of the analysis, such as quantifier…

Symbolic Computation · Computer Science 2025-10-16 Jonas Stübbe , Anne Remke , Erika Ábrahám

We present the tool Ranker for complementing B\"uchi automata (BAs). Ranker builds on our previous optimizations of rank-based BA complementation and pushes them even further using numerous heuristics to produce even smaller automata.…

Formal Languages and Automata Theory · Computer Science 2022-06-07 Vojtěch Havlena , Ondřej Lengál , Barbora Šmahlíková

This work explores a novel approach for adaptive, differentiable parametrization of large-scale non-stationary random fields. Coupled with any gradient-based algorithm, the method can be applied to variety of optimization problems,…

Optimization and Control · Mathematics 2019-03-19 Andrei Mukhin , Aleksey Khlyupin

We consider a general class of decision problems concerning formal languages, called ``(one-dimensional) unboundedness predicates'', for automata that feature reversal-bounded counters (RBCA). We show that each problem in this class reduces…

Formal Languages and Automata Theory · Computer Science 2023-01-25 Pascal Baumann , Flavio D'Alessandro , Moses Ganardi , Oscar Ibarra , Ian McQuillan , Lia Schütze , Georg Zetzsche

Stochastic optimization naturally appear in many application areas, including machine learning. Our goal is to go further in the analysis of the Stochastic Average Gradient Accelerated (SAGA) algorithm. To achieve this, we introduce a new…

Optimization and Control · Mathematics 2024-10-08 Luis Fredes , Bernard Bercu , Eméric Gbaguidi

We introduce a novel technique to analyse unambiguous B\"uchi automata quantitatively, and apply this to the model checking problem. It is based on linear-algebra arguments that originate from the analysis of matrix semigroups with constant…

Formal Languages and Automata Theory · Computer Science 2024-09-17 Stefan Kiefer , Cas Widdershoven

We study three two-stage optimization problems with a similar structure and different objectives. In the first stage of each problem, the goal is to assign input jobs of positive sizes to unsplittable bags. After this assignment is decided,…

Data Structures and Algorithms · Computer Science 2024-09-17 Leah Epstein , Asaf Levin

Probabilistic B\"uchi Automata (PBA) are randomized, finite state automata that process input strings of infinite length. Based on the threshold chosen for the acceptance probability, different classes of languages can be defined. In this…

Formal Languages and Automata Theory · Computer Science 2015-07-01 Rohit Chadha , A. Prasad Sistla , Mahesh Viswanathan

We study the determinisation and unambiguisation problems of weighted automata over the rational field: Given a weighted automaton, can we determine whether there exists an equivalent deterministic, respectively unambiguous, weighted…

Formal Languages and Automata Theory · Computer Science 2025-05-28 Ismaël Jecker , Filip Mazowiecki , David Purser

Grammatical inference is concerned with the study of algorithms for learning automata and grammars from words. We focus on learning Nondeterministic Finite Automaton of size k from samples of words. To this end, we formulate the problem as…

Logic in Computer Science · Computer Science 2021-07-15 Frédéric Lardeux , Eric Monfroy

We study the verification of distributed systems where processes are finite automata with access to a shared pool of locks. We consider objectives that are boolean combinations of local regular constraints. We show that the problem,…

Formal Languages and Automata Theory · Computer Science 2022-10-17 Corto Mascle

Large language models(LLMs) containing tens of billions of parameters (or even more) have demonstrated impressive capabilities in various NLP tasks. However, substantial model size poses challenges to training, inference, and deployment so…

Artificial Intelligence · Computer Science 2023-10-11 Yupeng Ji , Yibo Cao , Jiucai Liu

The study of finite automata and regular languages is a privileged meeting point of algebra and logic. Since the work of Buchi, regular languages have been classified according to their descriptive complexity, i.e. the type of logical…

Logic in Computer Science · Computer Science 2017-01-11 Pascal Tesson , Denis Therien

We consider the precedence-constrained scheduling problem to minimize the total weighted completion time. For a single machine several $2$-approximation algorithms are known, which are based on linear programming and network flows. We show…

Data Structures and Algorithms · Computer Science 2023-09-22 Sven Jäger , Philipp Warode
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