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MESA (Modules for Experiments in Stellar Astrophysics) has become very popular among astrophysicists as a powerful and reliable code to simulate stellar evolution. Analyzing the output data thoroughly may, however, present some challenges…

Solar and Stellar Astrophysics · Physics 2015-06-11 Maurizio Giannotti , Michael Wise , Aaron Mohammed

We describe two new packages ExactpAdics and ExactpAdicsII for the Magma computer algebra system for working with p-adic numbers exactly, in the sense that numbers are represented lazily to infinite p-adic precision. This has the benefits…

Number Theory · Mathematics 2018-05-25 Christopher Doris

The BUGS language offers a very flexible way of specifying complex statistical models for the purposes of Gibbs sampling, while its JAGS variant offers very convenient R integration via the rjags package. However, including smoothers in…

Computation · Statistics 2020-08-11 Simon N Wood

Spectral line observations are an indispensable tool to remotely probe the physical and chemical conditions throughout the universe. Modelling their behaviour is a computational challenge that requires dedicated software. In this paper, we…

Instrumentation and Methods for Astrophysics · Physics 2024-11-06 Thomas Ceulemans , Frederik De Ceuster , Leen Decin , Jeremy Yates

The open-source console MaRCoS, which stands for "Magnetic Resonance Control System", combines hardware, firmware and software elements for integral control of Magnetic Resonance Imaging (MRI) scanners. Previous developments have focused on…

Medical Physics · Physics 2025-07-29 J. M. Algarín , T. Guallart-Naval , J. Borreguero , F. Galve , J. Alonso

Since the first observations of interstellar molecules, astrochemical simulations have been employed to model and understand its formation and destruction path- ways. With the advent of high-resolution telescopes such as JWST and ALMA, the…

This article presents the MAGI software package for the inference of dynamic systems. The focus of MAGI is on dynamics modeled by nonlinear ordinary differential equations with unknown parameters. While such models are widely used in…

Computation · Statistics 2023-10-18 Samuel W. K. Wong , Shihao Yang , S. C. Kou

Automatic code generation for low-dimensional geometric algorithms is capable of producing efficient low-level software code through a high-level geometric domain specific language. Geometric Algebra (GA) is one of the most suitable…

Mathematical Software · Computer Science 2016-07-19 Ahmad Hosney Awad Eid

Recent strides in interpretable machine learning (ML) research reveal that models exploit undesirable patterns in the data to make predictions, which potentially causes harms in deployment. However, it is unclear how we can fix these…

We have developed a Mathematica package capable of performing gamma-matrix algebra in arbitrary (integer) dimensions. As an application we can compute Fierz transformations.

High Energy Physics - Theory · Physics 2007-05-23 Ulf Gran

This paper presents Deep Integrated Explanations (DIX) - a universal method for explaining vision models. DIX generates explanation maps by integrating information from the intermediate representations of the model, coupled with their…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Oren Barkan , Yehonatan Elisha , Jonathan Weill , Yuval Asher , Amit Eshel , Noam Koenigstein

Context. The Galactic magnetic field (GMF) has a huge impact on the evolution of the Milky Way. Yet currently there exists no standard model for it, as its structure is not fully understood. In the past many parametric GMF models of varying…

We introduce Atomistic learned potentials in JAX (apax), a flexible and efficient open source software package for training and inference of machine-learned interatomic potentials. Built on the JAX framework, apax supports GPU acceleration…

Chemical Physics · Physics 2025-11-19 Moritz René Schäfer , Nico Segreto , Fabian Zills , Christian Holm , Johannes Kästner

Multi-agent systems (MAS) utilizing multiple Large Language Model agents with Retrieval Augmented Generation and that can execute code locally may become beneficial in cosmological data analysis. Here, we illustrate a first small step…

Instrumentation and Methods for Astrophysics · Physics 2024-12-04 Andrew Laverick , Kristen Surrao , Inigo Zubeldia , Boris Bolliet , Miles Cranmer , Antony Lewis , Blake Sherwin , Julien Lesgourgues

Agent-based modeling (ABM) is a principal approach for studying complex systems. By decomposing a system into simpler, interacting agents, agent-based modeling (ABM) allows researchers to observe the emergence of complex phenomena.…

Multiagent Systems · Computer Science 2025-10-17 Siddharth Chaturvedi , Ahmed El-Gazzar , Marcel van Gerven

Several applications in astrophysics require adequately resolving many physical and temporal scales which vary over several orders of magnitude. Adaptive mesh refinement techniques address this problem effectively but often result in…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-10-07 Matthew Anderson , Maciej Brodowicz , Hartmut Kaiser , Bryce Adelstein-Lelbach , Thomas Sterling

Imitation Learning (IL) algorithms are typically evaluated in the same environment that was used to create demonstrations. This rewards precise reproduction of demonstrations in one particular environment, but provides little information…

Machine Learning · Computer Science 2020-11-03 Sam Toyer , Rohin Shah , Andrew Critch , Stuart Russell

With the advent of a new generation of telescopes (INTEGRAL, Fermi, H.E.S.S., MAGIC, VERITAS, MILAGRO) and the prospects of planned observatories such as CTA or HAWC, gamma-ray astronomy is becoming an integral part of modern astrophysical…

Instrumentation and Methods for Astrophysics · Physics 2011-10-31 Jürgen Knödlseder

The key to understanding the physical processes that occur during galaxy interactions is dynamical modeling, and especially the detailed matching of numerical models to specific systems. To make modeling interacting galaxies more efficient,…

We describe AMUSE, the Astrophysical Multipurpose Software Environment, a programming framework designed to manage multi-scale, multi-physics simulations in a hierarchical, extensible, and internally consistent way. Constructed as a…

Instrumentation and Methods for Astrophysics · Physics 2015-03-19 Stephen McMillan , Simon Portegies Zwart , Arjen van Elteren , Alfred Whitehead