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We present a method for hierarchical clustering of data called {\it mutual information clustering} (MIC) algorithm. It uses mutual information (MI) as a similarity measure and exploits its grouping property: The MI between three objects $X,…

Quantitative Methods · Quantitative Biology 2007-05-23 Alexander Kraskov , Harald Stoegbauer , Ralph G. Andrzejak , Peter Grassberger

For an arbitrary tree we investigate the problems of constructing a maximum matching which minimizes or maximizes the cardinality of a maximum matching of the graph obtained from original one by its removal and present corresponding…

Discrete Mathematics · Computer Science 2007-07-17 R. R. Kamalian , V. V. Mkrtchyan

Community detection is a fundamental problem in the analysis of complex networks. It is the analogue of clustering in network data mining. Within community detection methods, hierarchical algorithms are popular. However, their iterative…

Machine Learning · Computer Science 2020-09-16 Julio-Omar Palacio-Niño , Fernando Berzal

We present a link-by-link rule-based method for constructing all members of the ensemble of spanning trees for any recursively generated, finitely articulated graph, such as the DGM net. The recursions allow for many large-scale properties…

Physics and Society · Physics 2022-03-14 C. Tyler Diggans , Erik M. Bollt , Daniel ben-Avraham

Clustering evaluation measures are frequently used to evaluate the performance of algorithms. However, most measures are not properly normalized and ignore some information in the inherent structure of clusterings. We model the relation…

Machine Learning · Computer Science 2012-09-05 Qiaoliang Xiang , Qi Mao , Kian Ming Chai , Hai Leong Chieu , Ivor Tsang , Zhendong Zhao

AutoClustering methods aim to automate unsupervised learning tasks, including algorithm selection (AS), hyperparameter optimization (HPO), and pipeline synthesis (PS), by often leveraging meta-learning over dataset meta-features. While…

Machine Learning · Computer Science 2026-02-23 Matheus Camilo da Silva , Leonardo Arrighi , Ana Carolina Lorena , Sylvio Barbon Junior

Rooted acyclic graphs appear naturally when the phylogenetic relationship of a set $X$ of taxa involves not only speciations but also recombination, horizontal transfer, or hybridization, that cannot be captured by trees. A variety of…

Populations and Evolution · Quantitative Biology 2022-04-29 Marc Hellmuth , David Schaller , Peter F. Stadler

We propose a method for characterizing large complex networks by introducing a new matrix structure, unique for a given network, which encodes structural information; provides useful visualization, even for very large networks; and allows…

Disordered Systems and Neural Networks · Physics 2008-02-28 J. P. Bagrow , E. M. Bollt , J. D. Skufca , D. ben-Avraham

We present an axiomatic framework for analyzing the algorithmic properties of decision trees. This framework supports the classification of decision tree problems through structural and ancestral constraints within a rigorous mathematical…

Machine Learning · Computer Science 2025-10-24 Xi He , Max A. Little

We develop a full theoretical approach to clustering in complex networks. A key concept is introduced, the edge multiplicity, that measures the number of triangles passing through an edge. This quantity extends the clustering coefficient in…

Disordered Systems and Neural Networks · Physics 2009-11-11 M. Angeles Serrano , Marian Boguna

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods that, based on the dissimilarity structure, output hierarchical clusters, i.e., a family of nested…

Machine Learning · Computer Science 2016-07-22 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

How to determine the community structure of complex networks is an open question. It is critical to establish the best strategies for community detection in networks of unknown structure. Here, using standard synthetic benchmarks, we show…

Social and Information Networks · Computer Science 2013-01-15 Rodrigo Aldecoa , Ignacio Marín

We present a structural clustering algorithm for large-scale datasets of small labeled graphs, utilizing a frequent subgraph sampling strategy. A set of representatives provides an intuitive description of each cluster, supports the…

Databases · Computer Science 2016-10-03 Till Schäfer , Petra Mutzel

Many social networks and complex systems are found to be naturally divided into clusters of densely connected nodes, known as community structure (CS). Finding CS is one of fundamental yet challenging topics in network science. One of the…

Social and Information Networks · Computer Science 2016-02-03 Thang N. Dinh , Xiang Li , My T. Thai

This paper presents an algorithm to automatically design two-level fat-tree networks, such as ones widely used in large-scale data centres and cluster supercomputers. The two levels may each use a different type of switches from design…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-01-29 Konstantin S. Solnushkin

Matrix valued data has become increasingly prevalent in many applications. Most of the existing clustering methods for this type of data are tailored to the mean model and do not account for the dependence structure of the features, which…

Machine Learning · Statistics 2023-12-07 Inbeom Lee , Siyi Deng , Yang Ning

Graph clustering, which aims to divide nodes in the graph into several distinct clusters, is a fundamental yet challenging task. Benefiting from the powerful representation capability of deep learning, deep graph clustering methods have…

Machine Learning · Computer Science 2023-09-13 Yue Liu , Jun Xia , Sihang Zhou , Xihong Yang , Ke Liang , Chenchen Fan , Yan Zhuang , Stan Z. Li , Xinwang Liu , Kunlun He

Many methods have been developed for data clustering, such as k-means, expectation maximization and algorithms based on graph theory. In this latter case, graphs are generally constructed by taking into account the Euclidian distance as a…

Data Analysis, Statistics and Probability · Physics 2011-01-27 Francisco A. Rodrigues , Guilherme Ferraz de Arruda , Luciano da Fontoura Costa

Attributed graph clustering or community detection which learns to cluster the nodes of a graph is a challenging task in graph analysis. In this paper, we introduce a contrastive learning framework for learning clustering-friendly node…

Machine Learning · Computer Science 2022-05-12 Maedeh Ahmadi , Mehran Safayani , Abdolreza Mirzaei

A large body of work has been devoted to defining and identifying clusters or communities in social and information networks. We explore from a novel perspective several questions related to identifying meaningful communities in large…

Data Structures and Algorithms · Computer Science 2008-10-13 Jure Leskovec , Kevin J. Lang , Anirban Dasgupta , Michael W. Mahoney