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Optical flow is the motion of a pixel between at least two consecutive video frames and can be estimated through an end-to-end trainable convolutional neural network. To this end, large training datasets are required to improve the accuracy…
Light microscopy allows observing cellular features and objects with sub-micrometer resolution. As such, light microscopy has been playing a fundamental role in the life sciences for more than a hundred years. Fueled by the availability of…
Number of connected devices is steadily increasing and these devices continuously generate data streams. Real-time processing of data streams is arousing interest despite many challenges. Clustering is one of the most suitable methods for…
Simflowny is an open platform which automatically generates parallel code of scientific dynamical models for different simulation frameworks. Here we present major upgrades on this software to support an extended set of families of models,…
In recent years, crowd counting, a technique for predicting the number of people in an image, becomes a challenging task in computer vision. In this paper, we propose a cross-column feature fusion network to solve the problem of information…
Automated and computerised control of scientific instrumentation is almost ubiquitous in the modern laboratory. Most instrumentation is controlled over decades old communication busses or is accessed via proprietary system libraries. This…
We extend the concept of optical flow to a dynamic non-Euclidean setting. Optical flow is traditionally computed from a sequence of flat images. It is the purpose of this paper to introduce variational motion estimation for images that are…
Visual counting, a task that predicts the number of objects from an image/video, is an open-set problem by nature, i.e., the number of population can vary in $[0,+\infty)$ in theory. However, the collected images and labeled count values…
Tracking objects with persistence in cluttered and dynamic environments remains a difficult challenge for computer vision systems. In this paper, we introduce $\textbf{TCOW}$, a new benchmark and model for visual tracking through heavy…
Describing a video automatically with natural language is a challenging task in the area of computer vision. In most cases, the on-site situation of great events is reported in news, but the situation of the off-site spectators in the…
Cluster analysis has become one of the most exercised research areas over the past few decades in computer science. As a consequence, numerous clustering algorithms have already been developed to find appropriate partitions of a set of…
Creating new materials, discovering new drugs, and simulating systems are essential processes for research and innovation and require substantial computational power. While many applications can be split into many smaller independent tasks,…
Computational modeling is crucial for understanding and analyzing complex systems. In biology, model creation is a human dependent task that requires reading hundreds of papers and conducting wet lab experiments, which would take days or…
Since 2009, the Kepler, K2, and TESS missions have produced a vast number of lightcurves for public use. To assist citizen scientists in processing those lightcurves, the LcTools software system was developed. The system provides a set of…
PLUMED is an open-source software package that is widely used for analyzing and enhancing molecular dynamics simulations that works in conjunction with most available molecular dynamics softwares. While the computational cost of PLUMED…
Modern methods often formulate the counting of cells from microscopic images as a regression problem and more or less rely on expensive, manually annotated training images (e.g., dot annotations indicating the centroids of cells or…
Segmentation, or the outlining of objects within images, is a critical step in the measurement and analysis of cells within microscopy images. While improvements continue to be made in tools that rely on classical methods for segmentation,…
The linked cell list algorithm is an essential part of molecular simulation software, both molecular dynamics and Monte Carlo. Though it scales linearly with the number of particles, there has been a constant interest in increasing its…
Bio image analysis has recently become one keystone of biological research but biologists tend to get lost in a plethora of available software and the way to adjust available tools to their own image analysis problem. We present BIII,…
Automatic analysis of highly crowded people has attracted extensive attention from computer vision research. Previous approaches for crowd counting have already achieved promising performance across various benchmarks. However, to deal with…