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Simulations of macromolecular diffusion and adsorption in confined environments can offer valuable mechanistic insights into numerous biophysical processes. In order to model solutes at atomic detail on relevant time scales, Brownian…

Soft Condensed Matter · Physics 2021-03-16 Martin Reinhardt , Neil J. Bruce , Daria B. Kokh , Rebecca C. Wade

The confliction between the stable interface in phase-separated active Brownian particles and its negative surface tension, obtained mechanically via the active pressure, has sparked considerable debate about the formula of active surface…

Soft Condensed Matter · Physics 2025-03-06 Longfei Li , Zihao Sun , Mingcheng Yang

We study effective two- and three-body interactions between non-active colloidal inclusions in an active bath of chiral or non-chiral particles, using Brownian Dynamics simulations within a standard, two-dimensional model of disk-shaped…

Soft Condensed Matter · Physics 2017-12-06 Mahdi Zaeifi Yamchi , Ali Naji

The structural and dynamical properties of suspensions of self-propelled Brownian particles of spherical shape are investigated in three spatial dimensions. Our simulations reveal a phase separation into a dilute and a dense phase, above a…

Soft Condensed Matter · Physics 2015-05-12 Adam Wysocki , Roland G. Winkler , Gerhard Gompper

We study an active matter system comprised of magnetic microswimmers confined in a microfluidic channel and show that it exhibits a new type of self-organized behavior. Combining analytical techniques and Brownian dynamics simulations, we…

Statistical Mechanics · Physics 2021-02-24 Fanlong Meng , Daiki Matsunaga , Benoît Mahault , Ramin Golestanian

We study how hydrodynamic interactions affect the collective behaviour of active particles suspended in a fluid at high concentrations, with particular attention to lubrication forces which appear when the particles are very close to one…

Soft Condensed Matter · Physics 2018-05-29 Natsuhiko Yoshinaga , Tanniemola B. Liverpool

Curvature fundamentally alters the collective properties of soft, active, and biological materials. Here we study motility-induced phase separation (MIPS), a canonical non-equilibrium transition, and demonstrate that even weak and slowly…

Soft Condensed Matter · Physics 2026-03-17 Toler H. Webb , Helen S. Ansell , Daniel M. Sussman

A mesoscopic hydrodynamic model to simulate synthetic self-propelled Janus particles which is thermophoretically or diffusiophoretically driven is here developed. We first propose a model for a passive colloidal sphere which reproduces the…

Soft Condensed Matter · Physics 2014-03-05 Mingcheng Yang , Adam Wysocki , Marisol Ripoll

In the coarse grained Brownian Dynamics simulation method the many solvent molecules are replaced by random thermal kicks and an effective friction acting on the particles of interest. For Brownian Dynamics the friction has to be so strong…

Biomolecules · Quantitative Biology 2015-05-13 Uwe Winter , Tihamer Geyer

Hydrodynamic interactions in a suspension of spherical particles confined between two parallel planar walls are studied under creeping-flow conditions. The many-particle friction matrix in this system is evaluated using our novel numerical…

Fluid Dynamics · Physics 2009-11-11 S. Bhattacharya , J. Blawzdziewicz , E. Wajnryb

A new and very general technique for simulating solid-fluid suspensions has been described in a previous paper (Part I); the most important feature of the new method is that the computational cost scales with the number of particles. In…

comp-gas · Physics 2009-10-22 Anthony J. C. Ladd

Minimal models of self-propelled particles with short-range volume exclusion interactions have been shown to exhibit signatures of phase separation. Here I show that the observed interfacial stability and fluctuations in motility-induced…

Soft Condensed Matter · Physics 2017-01-11 Chiu Fan Lee

The rotational Brownian motion of colloidal spheres in dense suspensions reflects local hydrodynamics and friction, both key to non-linear rheological phenomena such as shear-thickening and jamming, and transport in crowded environments,…

Soft Condensed Matter · Physics 2021-06-23 Taiki Yanagishima , Yanyan Liu , Hajime Tanaka , Roel Dullens

The conformational and dynamical properties of active polymers in solution are determined by the nature of the activity, and the behavior of polymers with self-propelled, active Brownian particle-type monomers differs qualitatively from…

Soft Condensed Matter · Physics 2020-05-27 Aitor Martin-Gomez , Thomas Eisenstecken , Gerhard Gompper , Roland G. Winkler

The effect of gravity on the collective motion of living microswimmers, such as bacteria and micro-algae, is pivotal to unravel not only bio-convection patterns but also the settling of bacterial biofilms on solid surfaces. In this work, we…

Soft Condensed Matter · Physics 2025-04-07 C. Miguel Barriuso G. , Horacio Serna , Ignacio Pagonabarraga , Chantal Valeriani

A dilute suspension of active Brownian particles in a dense compressible viscoelastic fluid, forms a natural setting to study the emergence of nonreciprocity during a dynamical phase transition. At these densities, the transport of active…

Soft Condensed Matter · Physics 2021-10-14 Jyoti Prasad Banerjee , Rituparno Mandal , Deb Sankar Banerjee , Shashi Thutupalli , Madan Rao

Active work measures how far the local self-forcing of active particles translates into real motion. Using Population Monte Carlo methods, we investigate large deviations in the active work for repulsive active Brownian disks. Minimizing…

Statistical Mechanics · Physics 2019-02-12 Takahiro Nemoto , Étienne Fodor , Michael E. Cates , Robert L. Jack , Julien Tailleur

We investigate collective behavior of a system of two-dimensional interacting Brownian particles in the hydrodynamic regime. By means of the Martin-Siggia-Rose-Jenssen-de Dominicis formalism, we built up a generating functional for…

Statistical Mechanics · Physics 2025-03-10 Nathan O Silvano , Daniel G. Barci

Minimal models of active Brownian colloids consisting of self-propelled spherical particles with purely repulsive interactions have recently been identified as excellent quantitative testing grounds for theories of active matter and have…

Soft Condensed Matter · Physics 2016-04-12 M. Cristina Marchetti , Yaouen Fily , Silke Henkes , Adam Patch , David Yllanes

We establish the complete phase diagram of self-propelled hard disks in two spatial dimensions from the analysis of the equation of state and the statistics of local order parameters. The equilibrium melting scenario is maintained at small…