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Structural equation models (SEMs) have been widely adopted for inference of causal interactions in complex networks. Recent examples include unveiling topologies of hidden causal networks over which processes such as spreading diseases, or…

Machine Learning · Statistics 2017-04-05 Yanning Shen , Brian Baingana , Georgios B. Giannakis

Mathematical modelling has a long history in the context of collective cell migration, with applications throughout development, disease and regenerative medicine. The aim of modelling in this context is to provide a framework in which to…

Quantitative Methods · Quantitative Biology 2025-06-24 Ruth E. Baker , Rebecca M. Crossley , Carles Falco , Simon F. Martina-Perez

In this paper, a brief review of delay population models and their applications in ecology is provided. The inclusion of diffusion and nonlocality terms in delay models has given more capabilities to these models enabling them to capture…

Populations and Evolution · Quantitative Biology 2017-01-18 Majid Bani-Yaghoub

Lagrangian turbulence lies at the core of numerous applied and fundamental problems related to the physics of dispersion and mixing in engineering, bio-fluids, atmosphere, oceans, and astrophysics. Despite exceptional theoretical,…

The band structure of the Lam\'e equation, viewed as a one-dimensional Schr\"odinger equation with a periodic potential, is studied. At integer values of the degree parameter l, the dispersion relation is reduced to the l=1 dispersion…

Mathematical Physics · Physics 2008-02-04 Robert S. Maier

Time-periodic form or expression is a ubiquitous natural and man-made phenomenon observable in all the scientific and engineering disciplines. In this article, we propose a theory of periodic sequence (TPS), which can be formulated as a…

Signal Processing · Electrical Eng. & Systems 2023-06-16 Ben You , Ke Wu

We address regularised versions of the Expectation-Maximisation (EM) algorithm for Generalised Linear Mixed Models (GLMM) in the context of panel data (measured on several individuals at different time-points). A random response y is…

Methodology · Statistics 2019-08-21 Jocelyn Chauvet , Catherine Trottier , Xavier Bry

The extreme learning machine (ELM) method can yield highly accurate solutions to linear/nonlinear partial differential equations (PDEs), but requires the last hidden layer of the neural network to be wide to achieve a high accuracy. If the…

Numerical Analysis · Mathematics 2022-05-17 Naxian Ni , Suchuan Dong

Presenting systems of differential equations in the form of diagrams has become common in certain parts of physics, especially electromagnetism and computational physics. In this work, we aim to put such use of diagrams on a firm…

Mathematical Physics · Physics 2022-06-20 Evan Patterson , Andrew Baas , Timothy Hosgood , James Fairbanks

Sandpile models have been used to provide simple phenomenological models without incorporating the detailed features of a fully featured model. The Chapman sandpile model Chapman et al Physical Review Letters 86, 2814 (2001) has been used…

Plasma Physics · Physics 2020-02-05 C. A. Bowie , M. J. Hole

The present article is devoted to developing the Legendre wavelet operational matrix method (LWOMM) to find the numerical solution of two-dimensional hyperbolic telegraph equations (HTE) with appropriate initial time boundary space…

Numerical Analysis · Mathematics 2021-01-29 Vijay Kumar Patel , Dhirendra Bahuguna

We investigate the use of an extension of rule-based modelling for cellular signalling to create a structured space of model variants. This enables the incremental development of rule sets that start from simple mechanisms and which, by a…

Other Computer Science · Computer Science 2009-11-16 Russ Harmer

In recent years fully-parametric fast simulation methods based on generative models have been proposed for a variety of high-energy physics detectors. By their nature, the quality of data-driven models degrades in the regions of the phase…

Machine Learning · Computer Science 2023-03-03 Lucio Anderlini , Constantine Chimpoesh , Nikita Kazeev , Agata Shishigina

Discontinuities and delayed terms are encountered in the governing equations of a large class of problems ranging from physics and engineering to medicine and economics. These systems cannot be properly modelled and simulated with standard…

Artificial Intelligence · Computer Science 2024-09-27 Thibault Monsel , Onofrio Semeraro , Lionel Mathelin , Guillaume Charpiat

Multi-configurational electronic structure theory delivers the most versatile approximations to many-electron wavefunctions, flexible enough to deal with all sorts of transformations, ranging from electronic excitations, to open-shell…

Chemical Physics · Physics 2024-05-07 Kalman Szenes , Maximilian Moerchen , Paul Fischill , Markus Reiher

Localization properties of non-interacting quantum particles in one-dimensional incommensurate lattices are investigated with an exponential short-range hopping that is beyond the minimal nearest-neighbor tight-binding model. Energy…

Other Condensed Matter · Physics 2015-03-13 J. Biddle , S. Das Sarma

The polarizable embedding (PE) model is a fragment-based quantum-classical approach aimed at accurate inclusion of environment effects in quantum-mechanical response property calculations. The aim of this tutorial is to give insight into…

Maximum likelihood estimation (MLE) methods are widely used for evolutionary tree. As evolutionary tree is not a smooth parameter, the consistency of its MLE has been a topic of debate. It has been noted without proof that the classical…

Populations and Evolution · Quantitative Biology 2014-05-06 Arindam RoyChoudhury

Solving the electronic Schr\"odinger equation for changing nuclear coordinates provides access to the Born-Oppenheimer potential energy surface. This surface is the key starting point for almost all theoretical studies of chemical processes…

Chemical Physics · Physics 2022-01-14 Markus Reiher

Electrostatic forces play many important roles in molecular biology, but are hard to model due to the complicated interactions between biomolecules and the surrounding solvent, a fluid composed of water and dissolved ions. Continuum model…

Numerical Analysis · Mathematics 2015-12-29 Jaydeep P. Bardhan , Matthew G. Knepley
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