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The accurate tracking of live cells using video microscopy recordings remains a challenging task for popular state-of-the-art image processing based object tracking methods. In recent years, several existing and new applications have…

Image and Video Processing · Electrical Eng. & Systems 2025-02-03 Gergely Szabó , Paolo Bonaiuti , Andrea Ciliberto , András Horváth

Tracking of plant cells in images obtained by microscope is a challenging problem due to biological phenomena such as large number of cells, non-uniform growth of different layers of the tightly packed plant cells and cell division.…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Md Shazid Islam , Arindam Dutta , Calvin-Khang Ta , Kevin Rodriguez , Christian Michael , Mark Alber , G. Venugopala Reddy , Amit K. Roy-Chowdhury

Gene expression of social actions in Drosophilae has been attracting wide interest from biologists, medical scientists and psychologists. Gene-edited Drosophilae have been used as a test platform for experimental investigation. For example,…

Computer Vision and Pattern Recognition · Computer Science 2019-09-12 Khan Faraz , Ahmed Bouridane , Richard Jiang , Tiancheng Xia , Paul Chazot , Abdel Ennaceur

Drosophila melanogaster, a small dipteran of African origin, represents one of the best-studied model organisms. Early work in this system has uniquely shed light on the basic principles of genetics and resulted in a versatile collection of…

Populations and Evolution · Quantitative Biology 2018-10-12 Annabelle Haudry , Stefan Laurent , Martin Kapun

Several models of flocking have been promoted based on simulations with qualitatively naturalistic behavior. In this paper we provide the first direct application of computational modeling methods to infer flocking behavior from…

Other Quantitative Biology · Quantitative Biology 2015-05-30 Graciano Dieck Kattas , Xiao-Ke Xu , Michael Small

While generic object detection has achieved large improvements with rich feature hierarchies from deep nets, detecting small objects with poor visual cues remains challenging. Motion cues from multiple frames may be more informative for…

Computer Vision and Pattern Recognition · Computer Science 2018-05-16 Ryota Yoshihashi , Tu Tuan Trinh , Rei Kawakami , Shaodi You , Makoto Iida , Takeshi Naemura

Tree fruit breeding is a long-term activity involving repeated measurements of various fruit quality traits on a large number of samples. These traits are traditionally measured by manually counting the fruits, weighing to indirectly…

Computer Vision and Pattern Recognition · Computer Science 2023-02-15 Ritayu Nagpal , Sam Long , Shahid Jahagirdar , Weiwei Liu , Scott Fazackerley , Ramon Lawrence , Amritpal Singh

A human watching a video of closely-packed cells can generally identify every individual cell, regardless of density and noise, but most currently-available cell-tracking software cannot. This is because the human brain automatically builds…

Cell Behavior · Quantitative Biology 2017-09-27 Huy Pham , Emile Ramez Shehada , Shawna Stahlheber , Wayne B. Hayes

Distinguishing visually similar objects by their motion remains a critical challenge in computer vision. Although supervised trackers show promise, contemporary self-supervised trackers struggle when visual cues become ambiguous, limiting…

Computer Vision and Pattern Recognition · Computer Science 2025-12-03 Chenshuang Zhang , Kang Zhang , Joon Son Chung , In So Kweon , Junmo Kim , Chengzhi Mao

The accurate visual tracking of a moving object is a human fundamental skill that allows to reduce the relative slip and instability of the object's image on the retina, thus granting a stable, high-quality vision. In order to optimize…

Neurons and Cognition · Quantitative Biology 2016-11-24 Anna Montagnini , Laurent Perrinet , Guillaume S Masson

With respect to biological findings underlying fly's physiology in the past decade, we present a directionally selective neural network, with a feed-forward structure and entirely low-level visual processing, so as to implement direction…

Neural and Evolutionary Computing · Computer Science 2018-08-24 Qinbing Fu , Nicola Bellotto , Shigang Yue

Tracking multiple moving targets allows quantitative measure of the dynamic behavior in systems as diverse as animal groups in biology, turbulence in fluid dynamics and crowd and traffic control. In three dimensions, tracking several…

Morphogens are secreted signaling molecules that mediate tissue patterning and growth of embryonic tissues. They are secreted in a localized region and spread through the tissue to form a graded concentration profile. We present a…

We describe a straightforward, automated line tracking method to visualize within optical resolution the contour of linear macromolecules as they rearrange shape as a function of time by Brownian diffusion and under external fields such as…

Biological Physics · Physics 2011-02-24 Juan Guan , Bo Wang , Steve Granick

Object tracking is an important step in robotics and reautonomous driving pipelines, which has to generalize to previously unseen and complex objects. Existing high-performing methods often rely on pre-captured object views to build…

Computer Vision and Pattern Recognition · Computer Science 2025-12-16 Nikolai Goncharov , James L. Gray , Donald G. Dansereau

The transport of bio-particles in viscous flows exhibits a rich variety of dynamical behaviour, such as morphological transitions, complex orientation dynamics or deformations. Characterising such complex behaviour under well controlled…

The correlation between insect morphological traits and climate has been documented in physiological studies, but such studies remain limited by the time-consuming nature of the data analysis. In particular, the open source datasets often…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Megan Mirnalini Sundaram Rajaraman , Fons J. Verbeek , Vincent J. Kalkman , Rita Pucci

MoCap-based human identification, as a pattern recognition discipline, can be optimized using a machine learning approach. Yet in some applications such as video surveillance new identities can appear on the fly and labeled data for all…

Computer Vision and Pattern Recognition · Computer Science 2022-12-09 Michal Balazia , Petr Sojka

Zebrafish is an excellent model organism, which has been widely used in the fields of biological experiments, drug screening, and swarm intelligence. In recent years, there are a large number of techniques for tracking of zebrafish involved…

Computer Vision and Pattern Recognition · Computer Science 2022-08-10 Heng Cong , Mingzhu Sun , Duoying Zhou , Xin Zhao

Understanding collective pedestrian movement is crucial for applications in crowd management, autonomous navigation, and human-robot interaction. This paper investigates the use of sequential deep learning models, including Recurrent Neural…

Machine Learning · Computer Science 2025-08-12 Amartaivan Sanjjamts , Hiroshi Morita , Togootogtokh Enkhtogtokh