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To better understand DNA's 3D folding in cell nuclei, researchers developed chromosome capture methods such as Hi-C that measure the contact frequencies between all DNA segment pairs across the genome. As Hi-C data sets often are massive,…

Biological Physics · Physics 2023-11-14 Anton Holmgren , Dolores Bernenko , Ludvig Lizana

Meso-scale structures, such as core-periphery (CP) and community structure, have attracted significant attention in modern network science. While communities are characterized by dense intra-group and sparse inter-group connections, CP…

Social and Information Networks · Computer Science 2025-11-25 Imran Ansari , Pawanesh Pawanesh

We propose and study a set of algorithms for discovering community structure in networks -- natural divisions of network nodes into densely connected subgroups. Our algorithms all share two definitive features: first, they involve iterative…

Statistical Mechanics · Physics 2009-11-10 M. E. J. Newman , M. Girvan

In this paper we discuss a very simple approach of combining content and link information in graph structures for the purpose of community discovery, a fundamental task in network analysis. Our approach hinges on the basic intuition that…

Social and Information Networks · Computer Science 2012-12-04 Yiye Ruan , David Fuhry , Srinivasan Parthasarathy

Network science has presented community detection as a valuable tool for revealing functional modules in complex systems rooted in the wiring architectures of complex networks. The varying procedures of community detection can produce,…

Physics and Society · Physics 2025-04-11 Karsten N. Economou , Cassie R. Norman , Wendy C. Gentleman

Crowd counting from a single image is a challenging task due to high appearance similarity, perspective changes and severe congestion. Many methods only focus on the local appearance features and they cannot handle the aforementioned…

Computer Vision and Pattern Recognition · Computer Science 2019-05-27 Junyu Gao , Qi Wang , Xuelong Li

The study of complex networks has significantly advanced our understanding of community structures which serves as a crucial feature of real-world graphs. Detecting communities in graphs is a challenging problem with applications in…

Social and Information Networks · Computer Science 2024-07-15 Jiakang Li , Songning Lai , Zhihao Shuai , Yuan Tan , Yifan Jia , Mianyang Yu , Zichen Song , Xiaokang Peng , Ziyang Xu , Yongxin Ni , Haifeng Qiu , Jiayu Yang , Yutong Liu , Yonggang Lu

The problem of finding the densest subgraph in a given graph has several applications in graph mining, particularly in areas like social network analysis, protein and gene analyses etc. Depending on the application, finding dense subgraphs…

Data Structures and Algorithms · Computer Science 2019-11-07 Naga V. C. Gudapati , Enrico Malaguti , Michele Monaci

Community detection is the task of discovering groups of nodes sharing similar patterns within a network. With recent advancements in deep learning, methods utilizing graph representation learning and deep clustering have shown great…

Social and Information Networks · Computer Science 2022-11-14 E. Dmitriev , M. W. Chekol , S. Wang

Network analysis has played a key role in knowledge discovery and data mining. In many real-world applications in recent years, we are interested in mining multilayer networks, where we have a number of edge sets called layers, which encode…

Social and Information Networks · Computer Science 2022-11-08 Yasushi Kawase , Atsushi Miyauchi , Hanna Sumita

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

Community Search, or finding a connected subgraph (known as a community) containing the given query nodes in a social network, is a fundamental problem. Most of the existing community search models only focus on the internal cohesiveness of…

Social and Information Networks · Computer Science 2022-04-19 Junghoon Kim , Siqiang Luo , Gao Cong , Wenyuan Yu

Considering a clique as a conservative definition of community structure, we examine how graph partitioning algorithms interact with cliques. Many popular community-finding algorithms partition the entire graph into non-overlapping…

Physics and Society · Physics 2012-05-15 Fergal Reid , Aaron McDaid , Neil Hurley

Community detection is an important task in network analysis. A community (also referred to as a cluster) is a set of cohesive vertices that have more connections inside the set than outside. In many social and information networks, these…

Social and Information Networks · Computer Science 2015-04-06 Joyce Jiyoung Whang , David F. Gleich , Inderjit S. Dhillon

Community search is a widely studied semi-supervised graph clustering problem, retrieving a high-quality connected subgraph containing the user-specified query vertex. However, existing methods primarily focus on cohesiveness within the…

Social and Information Networks · Computer Science 2025-08-05 Longlong Lin , Yue He , Wei Chen , Pingpeng Yuan , Rong-Hua Li , Tao Jia

Community detection, or clustering, identifies groups of nodes in a graph that are more densely connected to each other than to the rest of the network. Given the size and dynamic nature of real-world graphs, efficient community detection…

Social and Information Networks · Computer Science 2024-10-22 Subhajit Sahu

Graphs are a fundamental data structure used to represent relationships in domains as diverse as the social sciences, bioinformatics, cybersecurity, the Internet, and more. One of the central observations in network science is that…

Social and Information Networks · Computer Science 2024-07-25 Sabyasachi Basu , Daniel Paul-Pena , Kun Qian , C. Seshadhri , Edward W Huang , Karthik Subbian

Most existing approaches for community detection require complete information of the graph in a specific scale, which is impractical for many social networks. We propose a novel algorithm that does not embrace the universal approach but…

Physics and Society · Physics 2015-03-30 Hui-Jia Li , Junhua Zhang , Zhi-Ping Liu , Luonan Chen , Xiang-Sun Zhang

Recent years have seen a surge of interest in the analysis of complex networks, facilitated by the availability of relational data and the increasingly powerful computational resources that can be employed for their analysis. Naturally, the…

Physics and Society · Physics 2013-08-08 Jean-Charles Delvenne , Michael T. Schaub , Sophia N. Yaliraki , Mauricio Barahona

Finding dense subgraphs of a large graph is a standard problem in graph mining that has been studied extensively both for its theoretical richness and its many practical applications. In this paper we introduce a new family of dense…

Data Structures and Algorithms · Computer Science 2021-06-07 Nate Veldt , Austin R. Benson , Jon Kleinberg