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HIV dynamical models are often based on non-linear systems of ordinary differential equations (ODE), which do not have analytical solution. Introducing random effects in such models leads to very challenging non-linear mixed-effects models.…

Statistics Theory · Mathematics 2010-02-03 D. Commenges , D. Jolly , H. Putter , R. Thiebaut

Estimating new HIV infections is significant yet challenging due to the difficulty in distinguishing between recent and long-term infections. We demonstrate that HIV recency status (recent v.s. long-term) could be determined from the…

Applications · Statistics 2024-11-13 Wenlong Yang , Danping Liu , Le Bao , Runze Li

In this paper, we have identified and analyzed the emergence, structure and dynamics of the paradigmatic research fronts that established the fundamentals of the biomedical knowledge on HIV/AIDS. A search of papers with the identifiers…

Social and Information Networks · Computer Science 2017-06-02 David Fajardo-Ortiz , Malaquias Lopez-Cervantes , Luis Duran , Michel Dumontier , Miguel Lara , Hector Ochoa , Victor M Castano

An approach for multiplex qualitative and quantitative microarray-based PCR analysis has been proposed. The characteristics of PCR executed on a gel-based oligonucleotide microarray with immobilized forward primers and a single common…

Quantitative Methods · Quantitative Biology 2009-01-22 Natalia V Zakharova , Alexei L Drobyshev , Dmitry A Khodakov , Anna I Myznikova , Irina A Gorban

Hypothesis. Isoniazid is one of the primary drugs used in tuberculosis treatment. Isoniazid encapsulation in liposomal vesicles can improve drug therapeutic index and minimize toxic and side effects. In this work, we consider mixtures of…

Objectives. This review gathers information on the potential role of antihistamines as anti-infective agents and identifies gaps in research that have impaired its applicability in human health. Methods. The literature search encompassed…

Tissues and Organs · Quantitative Biology 2022-06-08 Bruno L. Travi

Cervical (CC) and endometrial cancers (EC) are two common types of gynecological tumors that threaten the health of females worldwide. Since their underlying mechanisms and associations remain unclear, computational bioinformatics analysis…

Other Quantitative Biology · Quantitative Biology 2025-10-28 Md. Selim Reza , Mst. Ayesha Siddika , Md. Tofazzal Hossain , Md. Ashad Alam , Md. Nurul Haque Mollah

The vertebrate adaptive immune system provides a flexible and diverse set of molecules to neutralize pathogens. Yet, viruses such as HIV can cause chronic infections by evolving as quickly as the adaptive immune system, forming an…

Populations and Evolution · Quantitative Biology 2016-06-22 Armita Nourmohammad , Jakub Otwinowski , Joshua B. Plotkin

HIV is known for causing the destruction of the immune system by affecting different types of cells, while SARS-CoV-2 is an extremely contagious virus that leads to the development of COVID-19. In this study, we propose a mathematical model…

Populations and Evolution · Quantitative Biology 2024-11-05 João P. S. Maurício de Carvalho

In early HIV infection, the virus population escapes from multiple CD8+ cell responses. The later an escape mutation emerges, the slower it outgrows its competition, i. e. the escape rate is lower. This pattern could indicate that the…

Populations and Evolution · Quantitative Biology 2014-09-30 Victor Garcia , Roland Regoes

We report a first in modeling and simulation of the effects of the HIV proteins on the (caspase dependent) apoptotic pathway in infected cells. This work is novel and is an extension on the recent reports and clarifications on the FAS…

Molecular Networks · Quantitative Biology 2007-05-23 John Jack , Andrei Paun

The expansion of tools against HIV transmission has brought increased interest in epidemiological models that can predict the impact of these interventions. The EMOD-HIV model was recently compared to eleven other independently developed…

Quantitative Methods · Quantitative Biology 2012-06-19 Anna Bershteyn , Daniel J. Klein , Edward Wenger , Philip A. Eckhoff

HIV-1C is the most prevalent subtype of HIV-1 and accounts for over half of HIV-1 infections worldwide. Host genetic influence of HIV infection has been previously studied in HIV-1B, but little attention has been paid to the more prevalent…

Methodology · Statistics 2017-06-13 Denis Agniel , Wen Xie , Myron Essex , Tianxi Cai

Cervical intraepithelial neoplasia (CIN) is the development of abnormal cells on the surface of the cervix, caused by a human papillomavirus (HPV) infection. Although in most of the cases it is resolved by the immune system, a small…

Quantitative Methods · Quantitative Biology 2024-03-21 Vasiliki Bitsouni , Nikolaos Gialelis , Ioannis G. Stratis , Vasilis Tsilidis

The influenza/H1N1 virus has caused hazard in the public health of many countries. Hence, existing influenza drugs could not cope with H1N1 infection due to the high mutation rate of the virus. In this respect, new method to block the virus…

Other Quantitative Biology · Quantitative Biology 2016-09-07 Arli Aditya Parikesit , Harry Noviardi , Djati Kerami , Usman Sumo Friend Tambunan

Sexual contacts are the main spreading route of HIV. This puts sex workers at higher risk of infection even in populations where HIV prevalence is moderate or low. Alongside condom use, Pre-Exposure Prophylaxis (PrEP) is an effective tool…

In this paper, we investigate a novel 3-compartment model of HIV infection of CD4$^+$ T-cells with a mass action term by including two versions: one baseline ODE model and one delay-differential equation (DDE) model with a constant discrete…

Populations and Evolution · Quantitative Biology 2021-01-05 Hoang Anh Ngo , Hung Dang Nguyen , Mehmet Dik

Gonadotrophin-releasing hormone receptor (GnRH1R) is a promising therapeutic target for the treatment of uterine diseases. To date, several GnRH1R antagonists are available in clinical investigation without satisfying multiple property…

Biomolecules · Quantitative Biology 2022-07-26 Song Li , Song Ke , Chenxing Yang , Jun Chen , Yi Xiong , Lirong Zheng , Hao Liu , Liang Hong

Integrins are allosteric cell adhesion receptors that control many important processes, including cell migration, proliferation, and apoptosis. Ligand binding activates integrins by stabilizing an integrin conformation with separated…

Quantitative Methods · Quantitative Biology 2010-07-16 Federico Felizzi , Dagmar Iber

A significant part of the proteome is composed of intrinsically-disordered proteins (IDPs). These proteins do not fold into a well-defined structure and behave like ordinary polymers. In this work we consider IDPs which have the tendency to…

Biological Physics · Physics 2018-03-14 Dino Osmanovic , Yitzhak Rabin