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Using a lattice-based Monte Carlo code for simulating self-avoiding flexible polymers in three dimensions in the absence of explicit hydrodynamics, we study their Rouse modes. For self-avoiding polymers, the Rouse modes are not expected to…

Soft Condensed Matter · Physics 2009-10-20 Debabrata Panja , Gerard T. Barkema

Linear polymers are represented as chains of hopping reptons and their motion is described as a stochastic process on a lattice. This admittedly crude approximation still catches essential physics of polymer motion, i.e. the universal…

Statistical Mechanics · Physics 2015-05-18 J. M. J. van Leeuwen , Andrzej Drzewinski

Recently discrete dynamical models of walking droplet dynamics have allowed for fast numerical simulations of their horizontal chaotic motion and consequently the long-time statistical distribution of the droplet position. We develop a…

Dynamical Systems · Mathematics 2023-02-03 Gonzalo Ferrandez Quinto , Aminur Rahman

The stretching of a polymer chain by a large scale chaotic flow is considered. The steady state which emerges as a balance of the turbulent stretching and anharmonic resistance of the chain is quantitatively described, i.e. the dependency…

chao-dyn · Physics 2009-10-31 Michael Chertkov

We consider a continuum model of active viscoelastic matter, whereby an active nematic liquid-crystal is coupled to a minimal model of polymer dynamics with a viscoelastic relaxation time $\tau_C$. To explore the resulting interplay between…

Soft Condensed Matter · Physics 2016-03-30 E. J. Hemingway , M. E. Cates , S. M. Fielding

Asteroseismology is a powerful way of determining stellar parameters and properties of stars like the Sun. However, main-sequence F-type stars exhibit short mode lifetimes relative to their oscillation frequency, resulting in overlapping…

Solar and Stellar Astrophysics · Physics 2019-02-18 Douglas L. Compton , Timothy R. Bedding , Dennis Stello

Using Langevin dynamics complemented by Wang-Landau Monte Carlo simulations, we study the phase behavior of single and multiple semiflexible polymer chains in solution under poor-solvent conditions. In the case of a single chain, we obtain…

By means of multiscale molecular simulations, we show that telechelic-star polymers are a simple, robust and tunable system, which hierarchically self-assembles first into soft-patchy particles and then into targeted crystalline structures.…

Soft Condensed Matter · Physics 2015-06-11 Barbara Capone , Ivan Coluzza , Federica Lo verso , Christos N. Likos , Ronald Blaak

Developing microscopic understanding of the thermal properties of liquids is challenging due to their strong dynamic disorder, which prevents characterization of the atomic degrees of freedom. There have been significant research interests…

Disordered Systems and Neural Networks · Physics 2023-07-19 Jaeyun Moon , Lucas Lindsay , Takeshi Egami

We study a continuum model of overdamped self-propelled particles with an aligning interaction in two dimensions. By combining analytical and numerical work, we map out the phase diagram for generic parameters. We find that the system…

Biological Physics · Physics 2011-12-30 Arvind Gopinath , Michael F. Hagan , M. Cristina Marchetti , Aparna Baskaran

We consider the folding of a self-avoiding homopolymer on a lattice, with saturating hydrogen bond interactions. Our goal is to numerically evaluate the statistical distribution of the topological genus of pseudoknotted configurations. The…

Biomolecules · Quantitative Biology 2009-11-11 G. Vernizzi , P. Ribeca , H. Orland , A. Zee

By employing monomer-resolved computer simulations and analytical considerations based on polymer scaling theory, we analyze the conformations and interactions of multiarm star polymers strongly adsorbed on a smooth, two-dimensional plane.…

Soft Condensed Matter · Physics 2015-06-15 S. A. Egorov , J. Paturej , C. N. Likos , A. Milchev

We consider a model system in which anomalous diffusion is generated by superposition of underlying linear modes with a broad range of relaxation times. In the language of Gaussian polymers, our model corresponds to Rouse (Fourier) modes…

Statistical Mechanics · Physics 2010-03-11 Assaf Amitai , Yacov Kantor , Mehran Kardar

Recent experiments have shown that floating ferromagnetic beads, under the influence of an oscillating background magnetic field, can move along a liquid-air interface in a sustained periodic locomotion [Lumay et al., Soft Matter, 2013, 9,…

We study dynamics of a Rouse polymer chain, which diffuses in a three-dimensional space under the constraint that one of its ends, referred to as the slip-link, may move only along a one-dimensional line containing randomly placed,…

Statistical Mechanics · Physics 2007-05-23 S. Nechaev , G. Oshanin , A. Blumen

The eigenfrequency problem of fundamental vibrational mode in a highly inhomogeneous star, modeled by self-gravitating mass of viscous liquid with singular density at the center, is considered in juxtaposition with that for Kelvin…

Astrophysics · Physics 2009-02-10 S. I. Bastrukov , H. -K. Chang , E. -H. Wu , I. V. Molodtsova

The excursions of star clusters and galaxies around statistical equilibria are studied. For a stable ergodic model Antonov's Hermitian operator on six-dimensional phase space has the normal modes as its eigenfunctions. The excitation energy…

Astrophysics of Galaxies · Physics 2021-08-11 Jun Yan Lau , James Binney

The dynamical chaos in Lennard-Jones toy models of heteropolymers is studied by molecular dynamics simulations. It is shown that two nearby trajectories quickly diverge from each other if the heteropolymer corresponds to a random sequence.…

Statistical Mechanics · Physics 2009-10-31 Mai Suan Li , Marek Cieplak , Nazar Sushko

Blends of polymers of different topologies, such as ring and supercoiled, naturally occur in biology and often exhibit emergent viscoelastic properties coveted in industry. However, due to their complexity, along with the difficulty of…

We study the dynamics of a polymer, described as a variant of a Rouse chain, driven by an active terminal monomer (head). The local active force induces a transition from a globule-like to an elongated state, as revealed by the study of the…

Statistical Mechanics · Physics 2020-01-28 Laura Natali , Lorenzo Caprini , Fabio Cecconi
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