Related papers: The screening and ranking algorithm to detect DNA …
Organic scintillators are important in advancing nuclear detection and particle physics experiments. Achieving a high signal-to-noise ratio necessitates efficient pulse shape discrimination techniques to accurately distinguish between…
Gravitational-wave detection strategies are based on a signal analysis technique known as matched filtering. Despite the success of matched filtering, due to its computational cost, there has been recent interest in developing deep…
We introduce SuperNNova, an open source supernova photometric classification framework which leverages recent advances in deep neural networks. Our core algorithm is a recurrent neural network (RNN) that is trained to classify light-curves…
In the context of large spectroscopic surveys of stars, data-driven methods are key in deducing physical parameters for millions of spectra in a short time. Convolutional neural networks (CNNs) enable us to connect observables (e.g.…
Evolutionary computation methods have been successfully applied to neural networks since two decades ago, while those methods cannot scale well to the modern deep neural networks due to the complicated architectures and large quantities of…
Recently, due to the genomic sequence analysis in several types of cancer, the genomic data based on {\em copy number profiles} ({\em CNP} for short) are getting more and more popular. A CNP is a vector where each component is a…
Motivation: Array Comparative Genomic Hybridization (aCGH) is used to scan the entire genome for variations in DNA copy number. A central task in the analysis of aCGH data is the segmentation into groups of probes sharing the same DNA copy…
Early and accurate detection through Pap smear analysis is critical to improving patient outcomes and reducing mortality of Cervical cancer. State-of-the-art (SOTA) Convolutional Neural Networks (CNNs) require substantial computational…
Shannon entropy is widely used to measure the complexity of DNA sequences but suffers from saturation effects that limit its discriminative power for long uniform segments. We introduce a novel metric, the entropy rank ratio R, which…
We call change-point problem (CPP) the identification of changes in the probabilistic behavior of a sequence of observations. Solving the CPP involves detecting the number and position of such changes. In genetics the study of how and what…
Software developers routinely search for code using general-purpose search engines. However, these search engines cannot find code semantically unless it has an accompanying description. We propose a technique for semantic code search: A…
Convolutional Neural Networks (CNN) have gained great success in many artificial intelligence tasks. However, finding a good set of hyperparameters for a CNN remains a challenging task. It usually takes an expert with deep knowledge, and…
Evolutionary algorithms rely very heavily on randomized behavior. Execution speed, therefore, depends strongly on how we implement randomness, such as our choice of pseudorandom number generator, or the algorithms used to map pseudorandom…
Deep Convolutional Neural Networks (CNNs) have demonstrated excellent performance in image classification, but still show room for improvement in object-detection tasks with many categories, in particular for cluttered scenes and occlusion.…
Convolutional neural networks (CNNs) are able to attain better visual recognition performance than fully connected neural networks despite having much fewer parameters due to their parameter sharing principle. Modern architectures usually…
The remarkable performance of modern deep neural networks (DNNs) is largely driven by their massive scale, often comprising tens to hundreds of millions-or even billions-of parameters. However, such a scale incurs substantial storage and…
Content-based image retrieval (CBIR) in large medical image archives is a challenging and necessary task. Generally, different feature extraction methods are used to assign expressive and invariant features to each image such that the…
The study of genomic variation has provided key insights into the functional role of mutations. Predominantly, studies have focused on single nucleotide variants (SNV), which are relatively easy to detect and can be described with rich…
One of the brightest objects in the universe, supernovae (SNe) are powerful explosions marking the end of a star's lifetime. Supernova (SN) type is defined by spectroscopic emission lines, but obtaining spectroscopy is often logistically…
Discovery of diagnostic and prognostic molecular markers is important and actively pursued the research field in cancer research. For complex diseases, this process is often performed using Machine Learning. The current study compares two…