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Related papers: Sedimentation of Knotted Polymers

200 papers

Dynamics of a discrete polymer in time-dependent external potentials is studied with the master equation approach. We consider both stochastic and deterministic switching mechanisms for the potential states and give the essential equations…

Statistical Mechanics · Physics 2008-06-25 Janne Kauttonen , Juha Merikoski , Otto Pulkkinen

Knotted proteins embed a physical (i.e., open) knot within their native structures. For decades, significant effort has been devoted to elucidating the functional role of knots in proteins, yet no consensus has been reached. Here, using…

Biomolecules · Quantitative Biology 2026-03-13 João NC Especial , Patrícia FN Faísca

We use particle image velocimetry to measure the sedimentation dynamics of a semi-dilute suspension of non-Brownian spheres at Reynolds numbers, $0.001\le Re\le 2.3$, extending from the Stokes to the moderately inertial regime. We find that…

Fluid Dynamics · Physics 2007-09-10 P. N. Segre

Using molecular dynamics simulations we examine the dynamics of a family of model polymers with varying chain length and torsional potential barriers. We focus on features of the dynamics of polymers that are seen experimentally but absent…

Soft Condensed Matter · Physics 2019-06-11 Daniel Fragiadakis , C. Michael Roland

We present a numerical study of a thin elastic sheet with small extensibility freely sedimenting in a viscous fluid. Two scenarios are investigated: sedimentation in free space and near an infinite wall, where the wall may be vertical or…

Fluid Dynamics · Physics 2023-10-16 Yijiang Yu , Michael Graham

This paper studies the sedimentation-consolidation of a double porosity material, such as lumpy clay. Large displacements and finite strains are accounted for in a multidimensional setting. Fundamental equations are derived using a…

Classical Physics · Physics 2008-09-26 Henry Wong , Chin J. Leo , Jean-Michel Pereira , Philippe Dubujet

The streaming instability, as an example of instabilities driven by particle feedback on a gas flow, has been proven to have a major role in controlling the formation of planetesimals. Here, we present experiments to approach this situation…

Earth and Planetary Astrophysics · Physics 2019-02-08 Niclas Schneider , Gerhard Wurm , Jens Teiser , Hubert Klahr , Vincent Carpenter

A rigid-motion scattering computes adaptive invariants along translations and rotations, with a deep convolutional network. Convolutions are calculated on the rigid-motion group, with wavelets defined on the translation and rotation…

Computer Vision and Pattern Recognition · Computer Science 2014-03-10 Laurent SIfre , Stéphane Mallat

The transport of deformable particles through porous media underlies a wealth of applications ranging from filtration to oil recovery to the transport and spreading of biological agents. Using direct numerical simulations, we analyze the…

Soft Condensed Matter · Physics 2020-06-09 Brato Chakrabarti , Charles Gaillard , David Saintillan

We show that non-entangled polymers display an elastic-like behaviour at a macroscopic scale (probed at some 0.100 mm thickness) up to at least hundred degrees above the glass transition temperature. This observation, found under…

Soft Condensed Matter · Physics 2016-09-12 H Mendil , P Baroni , Laurence Noirez

We study the hydrodynamic coupling between particles and solid, rough boundaries characterized by random surface textures. Using the Lorentz reciprocal theorem, we derive analytical expressions for the grand mobility tensor of a spherical…

Fluid Dynamics · Physics 2020-08-27 Christina Kurzthaler , Lailai Zhu , Amir A. Pahlavan , Howard A. Stone

The habitat of microorganisms is typically complex and viscoelastic. A natural question arises: Do polymers in a suspension of active swimmers enhance chaotic motion or promote orientational order? We address this issue by performing…

Soft Condensed Matter · Physics 2025-12-23 Yuan Zhou , Qingzhi Zou , Ignacio Pagonabarraga , Kaihuan Zhang , Kai Qi

We introduce a system of shallow water-type equations to model laboratory experiments of particle-laden flows. We explore homogeneous liquid-solid suspensions of fine, non-cohesive, monodisperse glass beads which propagate as an equivalent…

Fluid Dynamics · Physics 2025-02-11 Andrea Bondesan , Laurence Girolami , François James , Loïc Rousseau

The behaviour of sedimenting particles depends on the dust-to-gas ratio of the fluid. Linear stability analysis shows that solids settling in the Epstein drag regime would remain homogeneously distributed in non-rotating incompressible…

Earth and Planetary Astrophysics · Physics 2016-06-29 Michiel Lambrechts , Anders Johansen , Holly L. Capelo , Jürgen Blum , Eberhard Bodenschatz

The formation of drops of a complex fluid, for instance including dissolved polymers and/or solid particles, has practical implications in several industrial and biophysical processes. In this Letter, we experimentally investigate the…

Soft Condensed Matter · Physics 2021-06-09 Virgile Thiévenaz , Alban Sauret

When injected through a contraction, high molecular weight polymer solutions exhibit a sharp increase of apparent viscosity which originates from stretching polymer chains above a critical extension rate. This chain stretching can also…

Fluid Dynamics · Physics 2020-04-22 Sandeep Garrepally , Stephane Jouenne , Peter D. Olmsted , Francois Lequeux

The transport of polymers with folded configurations across membrane pores is investigated theoretically by analyzing simple discrete stochastic models. The translocation dynamics is viewed as a sequence of two events: motion of the folded…

Statistical Mechanics · Physics 2009-11-13 Stanislav Kotsev , Anatoly B. Kolomeisky

The dynamical properties of a particle in a gravitational field colliding with a rigid wall moving with piecewise constant velocity are studied. The linear nature of the wall's motion permits further analytical investigation than is…

Chaotic Dynamics · Physics 2014-12-02 Cameron K. Langer , Bruce N. Miller

The effect of the microscopic structure of a pore on polymer translocation is studied using Langevin dynamics simulation, and the consequence of introducing patterned stickiness inside the pore is investigated. It is found that the…

Soft Condensed Matter · Physics 2013-02-01 Jack A. Cohen , Abhishek Chaudhuri , Ramin Golestanian

Oriented block copolymers exhibit a buckling instability when submitted to a tensile test perpendicular to the lamellae direction. In this paper we study this behavior using a coarse grained molecular dynamics simulation approach. Coarse…

Materials Science · Physics 2014-03-05 Ali Makke , Olivier Lame , Michel Perez , Jean-Louis Barrat