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Pairwise models are used widely to model epidemic spread on networks. These include the modelling of susceptible-infected-removed (SIR) epidemics on regular networks and extensions to SIS dynamics and contact tracing on more exotic networks…

Populations and Evolution · Quantitative Biology 2018-09-24 István Z. Kiss , Joel C. Miller , Péter L. Simon

Networks are ubiquitous in economic research on organizations, trade, and many other areas. However, while economic theory extensively considers networks, no general framework for their empirical modeling has yet emerged. We thus introduce…

Methodology · Statistics 2023-07-10 Giacomo De Nicola , Cornelius Fritz , Marius Mehrl , Göran Kauermann

The models in statistical physics such as an Ising model offer a convenient way to characterize stationary activity of neural populations. Such stationary activity of neurons may be expected for recordings from in vitro slices or…

Neurons and Cognition · Quantitative Biology 2017-05-05 Christian Donner , Klaus Obermayer , Hideaki Shimazaki

This paper investigates absorbing-state phase transitions in opinion dynamics through a master-node network model analyzed using annealing approximation. We develop a theoretical framework examining three fundamental regimes: systems…

Physics and Society · Physics 2025-12-29 M. O. Hase , Anderson A. Ferreira , André C. R. Martins , Fernando F. Ferreira

The probability distribution describing the state of a Stochastic Reaction Network evolves according to the Chemical Master Equation (CME). It is common to estimated its solution using Monte Carlo methods such as the Stochastic Simulation…

Quantitative Methods · Quantitative Biology 2015-06-18 Benjamin Hepp , Ankit Gupta , Mustafa Khammash

In nonlinear voter models the transitions between two states depend in a nonlinear manner on the frequencies of these states in the neighborhood. We investigate the role of these nonlinearities on the global outcome of the dynamics for a…

Statistical Mechanics · Physics 2009-04-05 Frank Schweitzer , Laxmidhar Behera

We introduce a simple model of static networks, where nodes are located on a ring structure, and two accompanying dynamic rules of repeated averaging on periodic node states. We assume nodes can interact with neighbors, and will add…

Physics and Society · Physics 2012-03-16 Suhan Ree

We study binary state contagion dynamics on a social network where nodes act in response to the average state of their neighborhood. We model the competing tendencies of imitation and non-conformity by incorporating an off-threshold into…

Physics and Society · Physics 2015-03-13 Kameron Decker Harris

Progress in theoretical physics is often made by the investigation of toy models, the model organisms of physics, which provide benchmarks for new methodologies. For complex systems, one such model is the adaptive voter model. Despite its…

Dynamical Systems · Mathematics 2014-10-24 Holly Silk , Güven Demirel , Martin Homer , Thilo Gross

Stochastic reaction networks are a fundamental model to describe interactions between species where random fluctuations are relevant. The master equation provides the evolution of the probability distribution across the discrete state space…

Molecular Networks · Quantitative Biology 2021-06-15 Tabea Waizmann , Luca Bortolussi , Andrea Vandin , Mirco Tribastone

The analysis on stability and bifurcations in the macroscopic dynamics exhibited by the system of two coupled large populations comprised of $N$ stochastic excitable units each is performed by studying an approximate system, obtained by…

Chaotic Dynamics · Physics 2015-06-11 I. Franovic , K. Todorovic , N. Vasovic , N. Buric

Epidemic propagation on networks represents an important departure from traditional massaction models. However, the high-dimensionality of the exact models poses a challenge to both mathematical analysis and parameter inference. By using…

Quantitative Methods · Quantitative Biology 2023-02-07 István Z. Kiss , Luc Berthouze , Wasiur R. KhudaBukhsh

We study binary state dynamics on a network where each node acts in response to the average state of its neighborhood. Allowing varying amounts of stochasticity in both the network and node responses, we find different outcomes in random…

Physics and Society · Physics 2014-07-09 Kameron Decker Harris , Christopher M. Danforth , Peter Sheridan Dodds

Collective adaptation, whether in innovation adoption, pro-environmental or organizational change, emerges from the interplay between individual decisions and social influence. Agent-based modeling provides a useful tool for studying such…

Physics and Society · Physics 2025-10-29 Angelika Abramiuk-Szurlej , Katarzyna Sznajd-Weron

Epidemic processes are common out-of-equilibrium phenomena of broad interdisciplinary interest. Recently, dynamic message-passing (DMP) has been proposed as an efficient algorithm for simulating epidemic models on networks, and in…

Physics and Society · Physics 2015-09-30 Munik Shrestha , Samuel V. Scarpino , Cristopher Moore

In this paper we extend the work of Smith and Papamichail (1999) and present fast approximate Bayesian algorithms for learning in complex scenarios where at any time frame, the relationships between explanatory state space variables can be…

Machine Learning · Computer Science 2013-01-30 Raffaella Settimi , Jim Q. Smith , A. S. Gargoum

Approximate master equations are derived for the two-state $q$-voter model with independence on signed random graphs, with negative and positive weights of links corresponding to antagonistic and reinforcing interactions, respectively.…

Statistical Mechanics · Physics 2024-02-27 Andrzej Krawiecki , Tomasz Gradowski

Adaptive voter models (AVMs) are simple mechanistic systems that model the emergence of mesoscopic structure from local networked processes driven by conflict and homophily. AVMs display rich behavior, including a phase transition from a…

Physics and Society · Physics 2020-03-16 Philip S. Chodrow , Peter J. Mucha

The phenomena that emerge from the interaction of the stochastic opening and closing of ion channels (channel noise) with the non-linear neural dynamics are essential to our understanding of the operation of the nervous system. The effects…

Neurons and Cognition · Quantitative Biology 2012-05-29 Patricio Orio , Daniel Soudry

Approximate message passing (AMP) refers to a class of efficient algorithms for statistical estimation in high-dimensional problems such as compressed sensing and low-rank matrix estimation. This paper analyzes the performance of AMP in the…

Information Theory · Computer Science 2018-10-23 Cynthia Rush , Ramji Venkataramanan