Related papers: A 2D model for hydrodynamics and biology coupling …
Modelling the evolution process for the growth of microalgae in an artificial pond is a huge challenge, given the complex interaction between hydrodynamics and biological processes occurring across various timescales. In this paper, we…
This paper focuses on mixing strategies and designing shape of the bottom topographies to enhance the growth of the microalgae in raceway ponds. A physical-biological coupled model is used to describe the growth of the algae. A simple model…
We present a coupled model describing growth of microalgae in a raceway cultivation process, accounting for hydrodynamics. Our approach combines a biological model (based on the Han model) and shallow water dynamics equations that model the…
Microalgae are an important source of precursors (e.g. lipids) for a variety of biosynthetic processes (e.g. biofuel production). Their co-culturing with other organisms providing essential substrates for growth may reduce cost and provide…
This paper focuses on mixing strategies to enhance the growth of microalgae in a raceway pond. The flow is assumed to be laminar and the Han model describing the dynamics of the photosystems is used as a basis to determine growth rate as a…
The design and optimization of photobioreactors (PBR) can benefit from the development of robust and yet quantitatively accurate computational models, that incorporate the complex interplay of fundamental phenomena. At a minimum, the…
We consider the impact of surface hydrodynamics on the interplay between curvature and composition in coarsening processes on model systems for biomembranes. This includes scaling laws and equilibrium configurations, which are investigated…
Some micro-algae are sensitive to light intensity gradients. This property is known as phototaxis: the algae swim toward a light source (positive phototaxis). We use this property to control the motion of micro-algae within a Poiseuille…
We consider two-phase fluid deformable surfaces as model systems for biomembranes. Such surfaces are modeled by incompressible surface Navier-Stokes-Cahn-Hilliard-like equations with bending forces. We derive this model using the…
In this review we discuss the recent progress in the simulation of soft active matter systems and in particular the hydrodynamics of microswimmers using the method of multiparticle collision dynamics, which solves the hydrodynamic flows…
In this paper we consider the multiscale modelling of water transport in vegetated soil. In the microscopic model we distinguish between subdomains of soil and plant tissue, and use the Richards equation to model the water transport through…
The great challenge with biological membrane systems is the wide range of scales involved, from nanometers and picoseconds for individual lipids, to the micrometers and beyond millisecond for cellular signalling processes. While…
A major challenge in the deployment of hydrokinetic turbines in aquatic environments is the risk of fish collisions. Traditional fish collision models often oversimplify this risk by neglecting critical factors, such as the thickness of the…
The water circulation in the Soil-Plant-Atmosphere continuum and particularly the soil erosion induced by water are problems of main concern in the new era of climate change. The present paper aims to provide a mathematical tool to…
In this article, we study in details the fluid dynamics system proposed in Clarelli et al (2013) to model the formation of cyanobacteria biofilms. After analyzing the linear stability of the unique non trivial equilibrium of the system, we…
In this work we present a novel methodology to deal with the optimal performance of raceways (open-channel ponds where the circulating wastewater, during its purification process, is used to grow algae that will be used as a source for the…
We propose a multi-layer approach to simulate hyperpycnal and hypopycnal plumes in flows with free surface. The model allows to compute the vertical profile of the horizontal and the vertical components of the velocity of the fluid flow.…
A dissipative particle dynamics (DPD) model for the quantitative simulation of biofilm growth controlled by substrate (nutrient) consumption, advective and diffusive substrate transport, and hydrodynamic interactions with fluid flow…
Cellular biology abound with filaments interacting through fluids, from intracellular microtubules, to rotating flagella and beating cilia. While previous work has demonstrated the complexity of capturing nonlocal hydrodynamic interactions…
The focus of this paper is the numerical solution of a pore-scale model for the growth of a permeable biofilm. The model includes water flux inside the biofilm, different biofilm components, and shear stress on the biofilm-water interface.…