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In this paper, we give polynomial-time algorithms that can take a graph G with a given combinatorial embedding on an orientable surface S of genus g and produce a planar drawing of G in R^2, with a bounding face defined by a polygonal…

Computational Geometry · Computer Science 2009-08-13 Christian A. Duncan , Michael T. Goodrich , Stephen G. Kobourov

Dense subgraph discovery aims to find a dense component in edge-weighted graphs. This is a fundamental graph-mining task with a variety of applications and thus has received much attention recently. Although most existing methods assume…

Machine Learning · Computer Science 2020-06-25 Yuko Kuroki , Atsushi Miyauchi , Junya Honda , Masashi Sugiyama

In this paper, we present new incremental algorithms for maintaining data structures that represent all connectivity cuts of size one in directed graphs (digraphs), and the strongly connected components that result by the removal of each of…

Data Structures and Algorithms · Computer Science 2018-03-01 Loukas Georgiadis , Giuseppe F. Italiano , Nikos Parotsidis

The sparsest cut problem consists of identifying a small set of edges that breaks the graph into balanced sets of vertices. The normalized cut problem balances the total degree, instead of the size, of the resulting sets. Applications of…

Social and Information Networks · Computer Science 2017-02-17 Arlei Silva , Ambuj Singh , Ananthram Swami

Neural networks that compute over graph structures are a natural fit for problems in a variety of domains, including natural language (parse trees) and cheminformatics (molecular graphs). However, since the computation graph has a different…

Neural and Evolutionary Computing · Computer Science 2017-02-23 Moshe Looks , Marcello Herreshoff , DeLesley Hutchins , Peter Norvig

Recent advancements in graph representation learning have shifted attention towards dynamic graphs, which exhibit evolving topologies and features over time. The increased use of such graphs creates a paramount need for generative models…

Machine Learning · Computer Science 2024-12-23 Ryien Hosseini , Filippo Simini , Venkatram Vishwanath , Henry Hoffmann

In streamed graph drawing, a planar graph, G, is given incrementally as a data stream and a straight-line drawing of G must be updated after each new edge is released. To preserve the mental map, changes to the drawing should be minimized…

Data Structures and Algorithms · Computer Science 2013-09-02 Michael T. Goodrich , Paweł Pszona

Many different classification tasks need to manage structured data, which are usually modeled as graphs. Moreover, these graphs can be dynamic, meaning that the vertices/edges of each graph may change during time. Our goal is to jointly…

Machine Learning · Computer Science 2019-08-20 Franco Manessi , Alessandro Rozza , Mario Manzo

In the subgraph counting problem, we are given a input graph $G(V, E)$ and a target graph $H$; the goal is to estimate the number of occurrences of $H$ in $G$. Our focus here is on designing sublinear-time algorithms for approximately…

Data Structures and Algorithms · Computer Science 2018-11-20 Sepehr Assadi , Michael Kapralov , Sanjeev Khanna

We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…

Discrete Mathematics · Computer Science 2021-03-22 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

Dynamic graphs with ordered sequences of events between nodes are prevalent in real-world industrial applications such as e-commerce and social platforms. However, representation learning for dynamic graphs has posed great computational…

Machine Learning · Computer Science 2021-12-16 Xinshi Chen , Yan Zhu , Haowen Xu , Mengyang Liu , Liang Xiong , Muhan Zhang , Le Song

We consider data structures for graphs where we maintain a subset of the nodes called sites, and allow proximity queries, such as asking for the closest site to a query node, and update operations that enable or disable nodes as sites. We…

Data Structures and Algorithms · Computer Science 2020-01-07 David Eppstein , Michael T. Goodrich , Nil Mamano

A directed graph $G$ is upward planar if it admits a planar embedding such that each edge is $y$-monotone. Unlike planarity testing, upward planarity testing is NP-hard except in restricted cases, such as when the graph has the…

Data Structures and Algorithms · Computer Science 2022-09-29 Ivor van der Hoog , Irene Parada , Eva Rotenberg

Generating graphs that are similar to real ones is an open problem, while the similarity notion is quite elusive and hard to formalize. In this paper, we focus on sparse digraphs and propose SDG, an algorithm that aims at generating graphs…

Data Structures and Algorithms · Computer Science 2018-07-06 Georgios Papoudakis , Philippe Preux , Martin Monperrus

Graphs are a basic tool for the representation of modern data. The richness of the topological information contained in a graph goes far beyond its mere interpretation as a one-dimensional simplicial complex. We show how topological…

Combinatorics · Mathematics 2018-10-11 Mattia G. Bergomi , Massimo Ferri , Lorenzo Zuffi

In this paper, we provide a general framework for counting geometric structures in pseudo-random graphs. As applications, our theorems recover and improve several results on the finite field analog of questions originally raised in the…

Combinatorics · Mathematics 2025-04-30 Thang Pham , Steven Senger , Michael Tait , Vu Thi Huong Thu

We present a data structure that can maintain a simple planar graph under edge contractions in linear total time. The data structure supports adjacency queries and provides access to neighbor lists in $O(1)$ time. Moreover, it can report…

Data Structures and Algorithms · Computer Science 2017-07-03 Jacob Holm , Giuseppe F. Italiano , Adam Karczmarz , Jakub Łącki , Eva Rotenberg , Piotr Sankowski

An arithmetical structure on a graph is given by a labeling of the vertices which satisfies certain divisibility properties. In this note, we look at several families of graphs and attempt to give counts on the number of arithmetical…

Combinatorics · Mathematics 2019-03-05 Darren Glass , Joshua Wagner

Graphs are widespread data structures used to model a wide variety of problems. The sheer amount of data to be processed has prompted the creation of a myriad of systems that help us cope with massive scale graphs. The pressure to deliver…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-09 Luis M. Vaquero , Felix Cuadrado , Matei Ripeanu

Real-time analysis of graphs containing temporal information, such as social media streams, Q&A networks, and cyber data sources, plays an important role in various applications. Among them, detecting patterns is one of the fundamental…

Databases · Computer Science 2023-12-19 Seunghwan Min , Jihoon Jang , Kunsoo Park , Dora Giammarresi , Giuseppe F. Italiano , Wook-Shin Han