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To establish the relationship between locomotory behavior and dynamics of neural circuits in the nematode C. elegans we combined molecular and theoretical approaches. In particular, we quantitatively analyzed the motion of C. elegans with…

Neurons and Cognition · Quantitative Biology 2008-06-10 Jan Karbowski , Gary Schindelman , Chris J. Cronin , Adeline Seah , Paul W. Sternberg

The nematode Caenorhabditis elegans, with information on neural connectivity, three-dimensional position and cell linage provides a unique system for understanding the development of neural networks. Although C. elegans has been widely…

Biological Physics · Physics 2011-01-17 Sreedevi Varier , Marcus Kaiser

Graphs are quickly emerging as a leading abstraction for the representation of data. One important application domain originates from an emerging discipline called "connectomics". Connectomics studies the brain as a graph; vertices…

In applications of group testing in networks, e.g. identifying individuals who are infected by a disease spread over a network, exploiting correlation among network nodes provides fundamental opportunities in reducing the number of tests…

Information Theory · Computer Science 2023-03-21 Hesam Nikpey , Jungyeol Kim , Xingran Chen , Saswati Sarkar , Shirin Saeedi Bidokhti

Biological circuits such as neural or gene regulation networks use internal states to map sensory input to an adaptive repertoire of behavior. Characterizing this mapping is a major challenge for systems biology, and though experiments that…

Neurons and Cognition · Quantitative Biology 2022-10-12 Edward D. Lee , Xiaowen Chen , Bryan C. Daniels

Deep learning methods for graphs achieve remarkable performance across a variety of domains. However, recent findings indicate that small, unnoticeable perturbations of graph structure can catastrophically reduce performance of even the…

Machine Learning · Computer Science 2020-10-29 Xiang Zhang , Marinka Zitnik

We investigate how locomotory behavior is generated in the brain focusing on the paradigmatic connectome of nematode Caenorhabditis elegans (C. elegans) and on neuronal activity patterns that control forward locomotion. We map the neuronal…

Adaptation and Self-Organizing Systems · Physics 2020-06-17 Thomas Maertens , Eckehard Schöll , Jorge Ruiz , Philipp Hövel

To find out the role of the wiring cost in the organization of the neural network of the nematode \textit{Caenorhapditis elegans} (\textit{C. elegans}), we build the neuronal map of \textit{C. elegans} based on geometrical positions of…

Neurons and Cognition · Quantitative Biology 2009-11-11 Yong-Yeol Ahn , Beom Jun Kim , Hawoong Jeong

The approach of quantifying the damage inflicted on a graph in Albert, Jeong and Barabsi's (AJB) report "Error and Attack Tolerance of Complex Networks" using the size of the largest connected component and the average size of the remaining…

Digital Libraries · Computer Science 2011-03-17 Charles L. Cartledge , Michael L. Nelson

The notions of $r$-robustness and $(r,s)$-robustness of a network have been earlier introduced in the literature to achieve resilient consensus in the presence of misbehaving agents. However, while higher robustness levels enable networks…

Systems and Control · Electrical Eng. & Systems 2026-03-02 Haejoon Lee , Dimitra Panagou

The main paradigm of smoothed analysis on graphs suggests that for any large graph $G$ in a certain class of graphs, perturbing slightly the edges of $G$ at random (usually adding few random edges to $G$) typically results in a graph having…

Combinatorics · Mathematics 2015-08-13 Michael Krivelevich , Daniel Reichman , Wojciech Samotij

A vertex whose removal in a graph $G$ increases the number of components of $G$ is called a cut vertex. For all $n,c$, we determine the maximum number of connected induced subgraphs in a connected graph with order $n$ and $c$ cut vertices,…

Combinatorics · Mathematics 2019-10-11 Audace A. V. Dossou-Olory

Graph Neural Networks (GNNs) have boosted the performance of many graph related tasks such as node classification and graph classification. Recent researches show that graph neural networks are vulnerable to adversarial attacks, which…

Machine Learning · Computer Science 2019-10-01 Yao Ma , Suhang Wang , Tyler Derr , Lingfei Wu , Jiliang Tang

A detailed analysis of three species-rich ecosystem food webs has shown that they display scale-free distributions of connections. Such graphs of interaction are in fact shared by a number of biological and technological networks, which…

Disordered Systems and Neural Networks · Physics 2007-05-23 Ricard V. Sole Jose M. Montoya

The present study was concerned with network failure problems for simple connected undirected graphs. A connected graph becomes unconnected through edge failure, under the assumptions that only edges can fail and each edge has an identical…

Probability · Mathematics 2024-10-29 Hiroaki Mohri , Jun-ichi Takeshita

In the Survivable Network Design Problem (SNDP), the input is an edge-weighted (di)graph $G$ and an integer $r_{uv}$ for every pair of vertices $u,v\in V(G)$. The objective is to construct a subgraph $H$ of minimum weight which contains…

Data Structures and Algorithms · Computer Science 2017-01-12 Manu Basavaraju , Pranabendu Misra , M. S. Ramanujan , Saket Saurabh

Cut vertices are often used as a measure of nodes' importance within a network. They are those nodes whose failure disconnects a graph. Let N(G) be the number of connected induced subgraphs of a graph $G$. In this work, we investigate the…

Combinatorics · Mathematics 2020-02-12 Audace A. V. Dossou-Olory

We present time-efficient distributed algorithms for decomposing graphs with large edge or vertex connectivity into multiple spanning or dominating trees, respectively. As their primary applications, these decompositions allow us to achieve…

Data Structures and Algorithms · Computer Science 2013-11-22 Keren Censor-Hillel , Mohsen Ghaffari , Fabian Kuhn

Caenorhabditis elegans (C. elegans) illustrated remarkable behavioral plasticities including complex non-associative and associative learning representations. Understanding the principles of such mechanisms presumably leads to constructive…

Neurons and Cognition · Quantitative Biology 2017-03-28 Ramin M. Hasani , Magdalena Fuchs , Victoria Beneder , Radu Grosu

In this paper we study the component structure of random graphs with independence between the edges. Under mild assumptions, we determine whether there is a giant component, and find its asymptotic size when it exists. We assume that the…

Probability · Mathematics 2010-06-29 Bela Bollobas , Svante Janson , Oliver Riordan