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Identifying document similarity has many applications, e.g., source code analysis or plagiarism detection. However, identifying similarities is not trivial and can be time complex. For instance, the Levenshtein Distance is a common metric…

Information Retrieval · Computer Science 2023-07-24 Peter Coates , Frank Breitinger

A string matching -- and more generally, sequence matching -- algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of comparisons (2n), and sublinear average-case behavior that is…

Data Structures and Algorithms · Computer Science 2008-10-02 David R. Musser , Gor V. Nishanov

Data series similarity search is an important operation and at the core of several analysis tasks and applications related to data series collections. Despite the fact that data series indexes enable fast similarity search, all existing…

Databases · Computer Science 2020-09-23 Michele Linardi , Themis Palpanas

The string indexing problem is a fundamental computational problem with numerous applications, including information retrieval and bioinformatics. It aims to efficiently solve the pattern matching problem: given a text T of length n for…

Data Structures and Algorithms · Computer Science 2025-09-03 Waseem Akram , Takuya Mieno

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…

Data Structures and Algorithms · Computer Science 2019-08-19 Simone Faro , Arianna Pavone , Francesco Pio Marino

A time series consists of a series of values or events obtained over repeated measurements in time. Analysis of time series represents and important tool in many application areas, such as stock market analysis, process and quality control,…

Artificial Intelligence · Computer Science 2013-12-30 Vladimir Kurbalija , Miloš Radovanović , Zoltan Geler , Mirjana Ivanović

The emergence of time-series foundation model research elevates the growing need to measure the (dis)similarity of time-series datasets. A time-series dataset similarity measure aids research in multiple ways, including model selection,…

Machine Learning · Computer Science 2025-07-31 Hongjie Chen , Akshay Mehra , Josh Kimball , Ryan A. Rossi

This paper presents an efficient approach for subsequence search in data streams. The problem consists in identifying coherent repetitions of a given reference time-series, eventually multi-variate, within a longer data stream. Dynamic Time…

Machine Learning · Computer Science 2019-07-17 Antonio Candelieri , Stanislav Fedorov , Enza Messina

Similarity search is a core component in various applications such as image matching, product recommendation and low-shot classification. However, single machine solutions are usually insufficient due to the large cardinality of modern…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-26 Shiyuan Deng , Xiao Yan , Kelvin K. W. Ng , Chenyu Jiang , James Cheng

Order-preserving pattern matching was introduced recently but it has already attracted much attention. Given a reference sequence and a pattern, we want to locate all substrings of the reference sequence whose elements have the same…

Data Structures and Algorithms · Computer Science 2018-12-11 Gianni Decaroli , Travis Gagie , Giovanni Manzini

Trajectories that capture object movement have numerous applications, in which similarity computation between trajectories often plays a key role. Traditionally, the similarity between two trajectories is quantified by means of heuristic…

Databases · Computer Science 2024-06-13 Yanchuan Chang , Egemen Tanin , Gao Cong , Christian S. Jensen , Jianzhong Qi

In this paper, we address a similarity search problem for spatial trajectories in road networks. In particular, we focus on the subtrajectory similarity search problem, which involves finding in a database the subtrajectories similar to a…

Databases · Computer Science 2020-07-13 Satoshi Koide , Chuan Xiao , Yoshiharu Ishikawa

The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…

Data Structures and Algorithms · Computer Science 2008-07-29 Dimitris Papamichail , Georgios Papamichail

This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the…

Genomics · Quantitative Biology 2018-11-05 David I. Hurwitz , Lianyi Han , Lewis Y. Geer

Full-text search engines are important tools for information retrieval. Term proximity is an important factor in relevance score measurement. In a proximity full-text search, we assume that a relevant document contains query terms near each…

Information Retrieval · Computer Science 2018-11-20 Alexander B. Veretennikov

Similarity query is the family of queries based on some similarity metrics. Unlike the traditional database queries which are mostly based on value equality, similarity queries aim to find targets "similar enough to" the given data objects,…

Databases · Computer Science 2022-04-19 Yifan Wang

Due to numerous public information sources and services, many methods to combine heterogeneous data were proposed recently. However, general end-to-end solutions are still rare, especially systems taking into account different context…

Information Retrieval · Computer Science 2018-07-27 Slavko Žitnik , Lovro Šubelj , Dejan Lavbič , Olegas Vasilecas , Marko Bajec

Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…

Data Structures and Algorithms · Computer Science 2016-04-26 Carl Barton , Costas S. Iliopoulos , Solon P. Pissis

The most useful data mining primitives are distance measures. With an effective distance measure, it is possible to perform classification, clustering, anomaly detection, segmentation, etc. For single-event time series Euclidean Distance…

Machine Learning · Computer Science 2022-12-14 Audrey Der , Chin-Chia Michael Yeh , Renjie Wu , Junpeng Wang , Yan Zheng , Zhongfang Zhuang , Liang Wang , Wei Zhang , Eamonn Keogh

We consider the problem of privately answering queries defined on databases which are collections of points belonging to some metric space. We give simple, computationally efficient algorithms for answering distance queries defined over an…

Data Structures and Algorithms · Computer Science 2012-12-03 Zhiyi Huang , Aaron Roth