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The imaginary time path integral formalism is applied to a nonlinear Hamiltonian for a short fragment of heterogeneous DNA with a stabilizing solvent interaction term. Torsional effects are modeled by a twist angle between neighboring base…

Biomolecules · Quantitative Biology 2011-09-19 Marco Zoli

We report a new approach to the thermal conductivity manipulation -- substrate coupling. Generally, the phonon scattering with substrates can decrease the thermal conductivity, as observed in recent experiments. However, we find that at…

Mesoscale and Nanoscale Physics · Physics 2015-05-19 Zhixin Guo , Dier Zhang , Xin-Gao Gong

Controlling thermal transport is important for a range of devices and technologies, from phase change memories to next-generation electronics. This is especially true in nano-scale devices where thermal transport is altered by the influence…

We investigate thermal transport in a two segment classical Heisenberg spin chain with nearest neighbor interaction and in presence of external magnetic field using computer simulation. The system is thermally driven by heat baths attached…

Statistical Mechanics · Physics 2013-11-11 Debarshee Bagchi

We report studies of the equilibrium and the dynamics of a general set of lattice models which capture the essence of the force-induced or mechanical DNA unzipping transition. Besides yielding the whole equilibrium phase diagram in the…

Soft Condensed Matter · Physics 2009-11-07 D. Marenduzzo , S. M. Bhattacharjee , A. Maritan , E. Orlandini , F. Seno

Navigating the intricacies of thermal management at the quantum scale is a challenge in the pursuit of advanced nanoscale technologies. To this extent, theoretical frameworks introducing minimal models mirroring the functionality of…

Quantum Physics · Physics 2024-07-01 André H. A. Malavazi , Borhan Ahmadi , Paweł Mazurek , Antonio Mandarino

Interest in studying the interaction of small molecules with DNA is caused by the need to develop new, highly effective, and low-toxic drugs for cancer treatment. The strong and highly specific binding of thionine with DNA makes it a…

Biological Physics · Physics 2026-04-29 Evgeniya Usenko , Alexander Glamazda , Vladimir Valeev , Victor Karachevtsev

The effect of heterogeneous sequence composition on the denaturation of double stranded DNA is investigated. The resulting pair-binding energy variation is found to have a negligible effect on the critical properties of the smooth second…

Statistical Mechanics · Physics 2009-10-30 D. Cule , T. Hwa

The advancements of nanomaterials or nanostructures have enabled the possibility of fabricating multifunctional materials that hold great promises in engineering applications. The carbon nanotube (CNT)-based nanostructure is one…

Computational Physics · Physics 2015-05-22 Haifei Zhan , John M. Bell , Yuantong Gu

Recent experiments indicated that disorder effect in DNA may lead to a transition of the charge transport mechanism from band resonant tunnelling to thermal activated hopping. In this letter, based on Mott's variable-range hopping theory we…

Soft Condensed Matter · Physics 2013-12-16 Yong-Gang Yang , Peng-Gang Yin , Xin-Qi Li anf YiJing Yan

DNA-gold nanoparticle assemblies have shown promise as an alternative technology to DNA microarrays for DNA detection and RNA profiling. Understanding the effect of DNA sequences on the melting temperature of the system is central to…

Biological Physics · Physics 2007-07-09 Nolan C. Harris , Ching-Hwa Kiang

The two strands of a DNA molecule with a repetitive sequence can pair into many different basepairing patterns. For perfectly periodic sequences, early bulk experiments of Poerschke indicate the existence of a sliding process, permitting…

Biomolecules · Quantitative Biology 2007-05-23 Richard A. Neher , Ulrich Gerland

DNA and Carbon nanotubes (CNTs) have unique physical, mechanical and electronic properties that make them revolutionary materials for advances in technology. In state-of-the-art applications, these physical properties can be exploited to…

Soft Condensed Matter · Physics 2015-03-13 Anh D. Phan , N. A. Viet

Phonon surface scattering has been at the core of heat transport engineering in nanoscale structures and devices. Herein, we demonstrate that this phonon pathway can be the sole mechanism only below a characteristic, size-dependent…

Understanding and controlling quantum transport in low-dimensional systems is pivotal for heat management at the nanoscale. One promising strategy to obtain the desired transport properties is to engineer particular spectral structures. In…

Disordered Systems and Neural Networks · Physics 2022-04-27 Cecilia Chiaracane , Archak Purkayastha , Mark T. Mitchison , John Goold

Applying a magnetic field to a solid changes its thermal-transport properties. Although such magneto-thermal-transport phenomena are usually small effects, giant magneto-thermal resistance has recently been observed in spintronic…

We consider transport of dilute two-dimensional electrons, with temperature between Fermi and Debye temperatures. In this regime, electrons form a nondegenerate plasma with mobility limited by potential disorder. Different kinds of…

Mesoscale and Nanoscale Physics · Physics 2009-06-11 D. S. Novikov

Modeling charge transport in DNA is essential to understand and control the electrical properties and develop DNA-based nanoelectronics. DNA is a fluctuating molecule that exists in a solvent environment, which makes the electron…

Biological Physics · Physics 2023-10-05 Hashem Mohammad , M. P. Anantram

The present work is devoted to the study of the thermostability of native DNA during binding to TiO$_{2}$ nanoparticles (NPs) at various concentrations under conditions close to physiological (0.1 M Na $^+$, pH 7) using thermal denaturation…

Controlling thermal transport at the nanoscale is vital for many applications. Previously, it has been shown that this control can be achieved with periodically nanostructured two-dimensional phononic crystals, for the case of suspended…

Mesoscale and Nanoscale Physics · Physics 2024-06-12 Samuli Heiskanen , Tuomas Puurtinen , Ilari J. Maasilta
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