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A measure called Physical Complexity is established and calculated for a population of sequences, based on statistical physics, automata theory, and information theory. It is a measure of the quantity of information in an organism's genome.…

Biological Physics · Physics 2011-12-02 Gerard Briscoe , Philippe De Wilde

Signal processing and Information theory are two disparate fields used for characterizing signals for various scientific and engineering applications. Spectral/Fourier analysis, a technique employed in signal processing, helps estimation of…

Information Theory · Computer Science 2023-09-22 Aditi Kathpalia , Nithin Nagaraj

Predictive inference requires balancing statistical accuracy against informational complexity, yet the choice of complexity measure is usually imposed rather than derived. We treat econometric objects as predictive rules, mappings from…

Statistics Theory · Mathematics 2026-02-16 Nicholas G. Polson , Daniel Zantedeschi

We describe how to analyze the wide class of non stationary processes with stationary centered increments using Shannon information theory. To do so, we use a practical viewpoint and define ersatz quantities from time-averaged probability…

Information Theory · Computer Science 2020-02-19 Carlos Granero-Belinchon , Stéphane G. Roux , Nicolas Garnier

While information is ubiquitously generated, shared, and analyzed in a modern-day life, there is still some controversy around the ways to asses the amount and quality of information inside a noisy optical channel. A number of theoretical…

A stochastic nonlinear dynamical system generates information, as measured by its entropy rate. Some---the ephemeral information---is dissipated and some---the bound information---is actively stored and so affects future behavior. We derive…

Statistical Mechanics · Physics 2015-06-19 Sarah Marzen , James P. Crutchfield

Complexity matching characterizes the role of information in interactions between systems and can be traced back to the 1957 Introduction to Cybernetics by Ross Ashby. We argue that complexity can be expressed in terms of crucial events,…

Adaptation and Self-Organizing Systems · Physics 2019-09-24 Korosh Mahmoodi , Bruce J. West , Paolo Grigolini

The concept of entropy, firstly introduced in information theory, rapidly became popular in many applied sciences via Shannon's formula to measure the degree of heterogeneity among observations. A rather recent research field aims at…

Methodology · Statistics 2017-03-20 Linda Altieri , Daniela Cocchi , Giulia Roli

Estimating the dissipation, or the entropy production rate (EPR), can provide insights into the underlying mechanisms of nonequilibrium driven processes. Experimentally, however, only partial information can be accessed, and the ability to…

Statistical Mechanics · Physics 2022-12-29 Uri Kapustin , Aishani Ghosal , Gili Bisker

A major problem for evolutionary theory is understanding the so called {\em open-ended} nature of evolutionary change, from its definition to its origins. Open-ended evolution (OEE) refers to the unbounded increase in complexity that seems…

Populations and Evolution · Quantitative Biology 2018-08-08 Bernat Corominas-Murtra , Luís Seoane , Ricard Solé

I formulate an entropy-rate maximization problem at the observable level for stochastic processes observed through an information-reducing observation map. For a visible stationary law, the map determines an observational fiber of hidden…

Information Theory · Computer Science 2026-04-14 Oleg Kiriukhin

A major obstacle in analyzing the evolution of information exchange and processing is our insufficient understanding of the underlying signaling and decision-making biological mechanisms. For instance, it is unclear why are humans unique in…

Populations and Evolution · Quantitative Biology 2008-09-06 A. Feigel

This thesis investigates the interactions of different degrees of freedom of one joint system within the theory of stochastic thermodynamics. First, a comprehensive introduction to the subjects of stochastic processes, information theory…

Statistical Mechanics · Physics 2020-07-31 Jannik Ehrich

What does the informational complexity of dynamical networked systems tell us about intrinsic mechanisms and functions of these complex systems? Recent complexity measures such as integrated information have sought to operationalize this…

Neural and Evolutionary Computing · Computer Science 2017-07-06 Xerxes D. Arsiwalla , Pedro A. M. Mediano , Paul F. M. J. Verschure

In many real-world situations, there are constraints on the ways in which a physical system can be manipulated. We investigate the entropy production (EP) and extractable work involved in bringing a system from some initial distribution $p$…

Statistical Mechanics · Physics 2022-11-22 Artemy Kolchinsky , David H. Wolpert

We consider a hidden Markov model with multiple observation processes, one of which is chosen at each point in time by a policy---a deterministic function of the information state---and attempt to determine which policy minimises the…

Probability · Mathematics 2015-03-17 James Y. Zhao

The fundamental equations of various disciplines often seem to share the same basic structure. Natural selection increases information in the same way that Bayesian updating increases information. Thermodynamics and the forms of common…

Populations and Evolution · Quantitative Biology 2018-12-18 Steven A. Frank

Three laws of information theory have been proposed. Labeling by introducing nonsymmetry and formatting by introducing symmetry are defined. The function L (L=lnw, w is the number of microstates, or the sum of entropy and information,…

Chemical Physics · Physics 2007-05-23 Shu-Kun Lin

In this work, we use the theory of quantum states over time to define an entropy $S(\rho,\mathcal{E})$ associated with quantum processes $(\rho,\mathcal{E})$, where $\rho$ is a state and $\mathcal{E}$ is a quantum channel responsible for…

Quantum Physics · Physics 2023-07-24 James Fullwood , Arthur J. Parzygnat

This study introduces the syntropy function ($S_N$) and expectancy function ($E_N$), derived from the novel function $\phi$, to provide a refined perspective on complexity, extending beyond conventional entropy analysis. $S_N$ is designed…

Statistical Mechanics · Physics 2024-03-21 Santiago Mendez-Moreno
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