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The application of deep learning methods, particularly foundation models, in biological research has surged in recent years. These models can be text-based or trained on underlying biological data, especially omics data of various types.…

Artificial Intelligence · Computer Science 2024-12-06 Yoav Kan-Tor , Michael Morris Danziger , Eden Zohar , Matan Ninio , Yishai Shimoni

The development, assessment, and comparison of randomized search algorithms heavily rely on benchmarking. Regarding the domain of constrained optimization, the number of currently available benchmark environments bears no relation to the…

Neural and Evolutionary Computing · Computer Science 2018-07-27 Michael Hellwig , Hans-Georg Beyer

Bayesian optimization is a sequential method for minimizing objective functions that are expensive to evaluate and about which few assumptions can be made. By using all gathered data to train a Gaussian process model for the function and…

Machine Learning · Computer Science 2026-05-07 Jesse Schneider , William J. Welch

Classical benchmark problems utilize multiple transformation techniques to increase optimization difficulty, e.g., shift for anti centering effect and rotation for anti dimension sensitivity. Despite testing the transformation invariance,…

Neural and Evolutionary Computing · Computer Science 2020-12-14 Chunxiuzi Liu , Fengyang Sun , Qingrui Ni , Lin Wang , Bo Yang

Adaptive random search approaches have been shown to be effective for global optimization problems, where under certain conditions, the expected performance time increases only linearly with dimension. However, previous analyses assume that…

Optimization and Control · Mathematics 2022-03-22 David D. Linz , Zelda B. Zabinsky

We consider the problem of global optimization with noisy zeroth order oracles - a well-motivated problem useful for various applications ranging from hyper-parameter tuning for deep learning to new material design. Existing work relies on…

Machine Learning · Computer Science 2023-07-21 Chong Liu , Yu-Xiang Wang

This paper focuses on the problem of evolving Boolean functions of odd sizes with high nonlinearity, a property of cryptographic relevance. Despite its simple formulation, this problem turns out to be remarkably difficult. We perform a…

Neural and Evolutionary Computing · Computer Science 2025-04-25 Claude Carlet , Marko Đurasevic , Domagoj Jakobovic , Stjepan Picek , Luca Mariot

In this paper, we extend a class of globally convergent evolution strategies to handle general constrained optimization problems. The proposed framework handles relaxable constraints using a merit function approach combined with a specific…

Optimization and Control · Mathematics 2018-10-18 Youssef Diouane

Evolutionary algorithms have been frequently applied to constrained continuous optimisation problems. We carry out feature based comparisons of different types of evolutionary algorithms such as evolution strategies, differential evolution…

Artificial Intelligence · Computer Science 2015-09-24 Shayan Poursoltan , Frank Neumann

We revisit the problem of assigning a score (a quality of fit) to candidate geometric models -- one of the key components of RANSAC for robust geometric fitting. In a non-robust setting, the ``gold standard'' scoring function, known as the…

Computer Vision and Pattern Recognition · Computer Science 2025-12-24 A. Shekhovtsov

The search for life outside the Solar System is an endeavour of astronomers all around the world. With hundreds of exoplanets being discovered due to advances in astronomy, there is a need to classify the habitability of these exoplanets.…

Neural and Evolutionary Computing · Computer Science 2021-01-19 Sriram Krishna , Niharika Pentapati

The advent of Large Language Models (LLMs) has opened new frontiers in automated algorithm design, giving rise to numerous powerful methods. However, these approaches retain critical limitations: they require extensive evaluation of the…

Neural and Evolutionary Computing · Computer Science 2026-02-05 Haoran Yin , Shuaiqun Pan , Zhao Wei , Jian Cheng Wong , Yew-Soon Ong , Anna V. Kononova , Thomas Bäck , Niki van Stein

Algorithms for learning programmatic representations for sequential decision-making problems are often evaluated on out-of-distribution (OOD) problems, with the common conclusion that programmatic policies generalize better than neural…

Machine Learning · Computer Science 2025-06-18 Amirhossein Rajabpour , Kiarash Aghakasiri , Sandra Zilles , Levi H. S. Lelis

In this paper, we study the problem of finding the global minima of a given function. Specifically, we consider complicated functions with numerous local minima, as is often the case for real-world data mining losses. We do so by applying a…

Neural and Evolutionary Computing · Computer Science 2025-11-20 Simon Klüttermann

Genetic Algorithms (GA) are a class of metaheuristic global optimization methods inspired by the process of natural selection among individuals in a population. Despite their widespread use, a comprehensive theoretical analysis of these…

Optimization and Control · Mathematics 2025-02-24 Giacomo Borghi , Lorenzo Pareschi

Benchmarking the performance of quantum optimization algorithms is crucial for identifying utility for industry-relevant use cases. Benchmarking processes vary between optimization applications and depend on user-specified goals. The…

We present a genetic algorithm for the atomistic design and global optimisation of substitutionally disordered bulk materials and surfaces. Premature convergence which hamper conventional genetic algorithms due to problems with…

Materials Science · Physics 2008-09-10 Chris E. Mohn , Walter Kob

A random-key genetic algorithm is an evolutionary metaheuristic for discrete and global optimization. Each solution is encoded as a vector of N random keys, where a random key is a real number randomly generated in the continuous interval…

Neural and Evolutionary Computing · Computer Science 2026-01-13 Mariana A. Londe , Luciana S. Pessoa , Carlos E. Andrade , José F. Gonçalves , Mauricio G. C. Resende

Benchmarking has driven scientific progress in Evolutionary Computation, yet current practices fall short of real-world needs. Widely used synthetic suites such as BBOB and CEC isolate algorithmic phenomena but poorly reflect the structure,…

There are many areas of scientific endeavour where large, complex datasets are needed for benchmarking. Evolutionary computing provides a means towards creating such sets. As a case study, we consider Conway's Surreal numbers. They have…

Neural and Evolutionary Computing · Computer Science 2025-04-11 Matthew Roughan
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