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A quasispecies is a set of interrelated genotypes that have reached a situation of equilibrium while evolving according to the usual Darwinian principles of selection and mutation. Quasispecies studies invariably assume that it is possible…

Populations and Evolution · Quantitative Biology 2012-08-21 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

Relations between discrete quantities such as people, genes, or streets can be described by networks, which consist of nodes that are connected by edges. Network analysis aims to identify important nodes in a network and to uncover…

Numerical Analysis · Mathematics 2021-09-21 A. Concas , S. Noschese , L. Reichel , G. Rodriguez

A Bayesian network is a graphical model that encodes probabilistic relationships among variables of interest. When used in conjunction with statistical techniques, the graphical model has several advantages for data analysis. One, because…

Machine Learning · Computer Science 2022-01-11 David Heckerman

Bayesian neural network posterior distributions have a great number of modes that correspond to the same network function. The abundance of such modes can make it difficult for approximate inference methods to do their job. Recent work has…

Machine Learning · Statistics 2024-07-03 Tommy Rochussen

Despite their theoretical importance, dynamic Bayesian networks associated with quantum processes are currently not accessible experimentally. We here describe a general scheme to determine the multi-time path probability of a Bayesian…

Quantum Physics · Physics 2021-04-06 Kaonan Micadei , Gabriel T. Landi , Eric Lutz

Numerical relativity (NR) enables the study of physics in strong and dynamical gravitational fields and provides predictions for the gravitational-wave signals produced by merging black holes. Despite the impressive accuracy of modern…

General Relativity and Quantum Cosmology · Physics 2025-10-15 Richard Dyer , Christopher J. Moore

We consider a Bayesian method for learning the Bayesian network structure from complete data. Recently, Koivisto and Sood (2004) presented an algorithm that for any single edge computes its marginal posterior probability in O(n 2^n) time,…

Machine Learning · Computer Science 2012-07-02 Mikko Koivisto

Probabilistic predictions from neural networks which account for predictive uncertainty during classification is crucial in many real-world and high-impact decision making settings. However, in practice most datasets are trained on…

Machine Learning · Computer Science 2022-09-30 Satya Borgohain , Klaus Ackermann , Ruben Loaiza-Maya

The Poisson compound decision problem is a long-standing problem in statistics, where empirical Bayes methodologies are commonly used to estimate Poisson's means in static or batch domains. In this paper, we study the Poisson compound…

Methodology · Statistics 2025-06-10 Stefano Favaro , Sandra Fortini

The causal (belief) network is a well-known graphical structure for representing independencies in a joint probability distribution. The exact methods and the approximation methods, which perform probabilistic inference in causal networks,…

Artificial Intelligence · Computer Science 2013-04-05 Richard E. Neapolitan , James Kenevan

To learn (statistical) dependencies among random variables requires exponentially large sample size in the number of observed random variables if any arbitrary joint probability distribution can occur. We consider the case that sparse data…

Machine Learning · Computer Science 2007-05-23 Dominik Janzing , Daniel Herrmann

Process mining is a technique that performs an automatic analysis of business processes from a log of events with the promise of understanding how processes are executed in an organisation. Several models have been proposed to address this…

Artificial Intelligence · Computer Science 2015-03-26 Catarina Moreira

The Bayesian approach provides powerful methods for variable selection. The ability to incorporate sparsity through prior beliefs and account for parameter uncertainty allows Bayesian variable selection to consistently identify which of the…

Methodology · Statistics 2026-03-05 Beniamino Hadj-Amar , Jack Jewson

Predictive recursion is an accurate and computationally efficient algorithm for nonparametric estimation of mixing densities in mixture models. In semiparametric mixture models, however, the algorithm fails to account for any uncertainty in…

Methodology · Statistics 2015-03-19 Ryan Martin , Surya T. Tokdar

Algorithms for learning the conditional probabilities of Bayesian networks with hidden variables typically operate within a high-dimensional search space and yield only locally optimal solutions. One way of limiting the search space and…

Artificial Intelligence · Computer Science 2013-01-18 Frank Wittig , Anthony Jameson

We describe a graphical model for probabilistic relationships---an alternative to the Bayesian network---called a dependency network. The graph of a dependency network, unlike a Bayesian network, is potentially cyclic. The probability…

Artificial Intelligence · Computer Science 2013-01-18 David Heckerman , David Maxwell Chickering , Christopher Meek , Robert Rounthwaite , Carl Kadie

Approximate Bayesian Computation (ABC for short) is a family of computational techniques which offer an almost automated solution in situations where evaluation of the posterior likelihood is computationally prohibitive, or whenever…

Statistics Theory · Mathematics 2013-06-04 Gérard Biau , Frédéric Cérou , Arnaud Guyader

Multilayer (or deep) networks are powerful probabilistic models based on multiple stages of a linear transform followed by a non-linear (possibly random) function. In general, the linear transforms are defined by matrices and the non-linear…

Information Theory · Computer Science 2017-10-13 Galen Reeves

This paper introduces hierarchical quasi-clustering methods, a generalization of hierarchical clustering for asymmetric networks where the output structure preserves the asymmetry of the input data. We show that this output structure is…

Machine Learning · Computer Science 2014-04-21 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

We introduce implicit Bayesian neural networks, a simple and scalable approach for uncertainty representation in deep learning. Standard Bayesian approach to deep learning requires the impractical inference of the posterior distribution…

Machine Learning · Statistics 2020-10-27 Trung Trinh , Samuel Kaski , Markus Heinonen
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