Related papers: Regenerative tree growth: structural results and c…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
We propose a transformer architecture and training strategy for tree generation. The architecture processes data at multiple resolutions and has an hourglass shape, with middle layers processing fewer tokens than outer layers. Similar to…
We model the growth of a cell population by a piecewise deterministic Markov branching tree. Each cell splits into two offsprings at a division rate $B(x)$ that depends on its size $x$. The size of each cell grows exponentially in time, at…
We consider random recursive trees that are grown via community modulated schemes that involve random attachment or degree based attachment. The aim of this paper is to derive general techniques based on continuous time embedding to study…
We look for partition theorems for large subtrees for suitable uncountable trees and colourings. We concentrate on sub-trees of $^{\kappa \ge} 2$ expanded by a well ordering of each level. Unlike earlier works, we do not ask the embedding…
We are interested in the local limits of families of random trees that satisfy the Markov branching property, which is fulfilled by a wide range of models. Loosely, this property entails that given the sizes of the sub-trees above the root,…
We study locally interacting processes in discrete time, often called probabilistic cellular automata, indexed by locally finite graphs. For infinite regular trees and certain generalized Galton-Watson trees, we show that the marginal…
We study the following growth model on a regular d-ary tree. Points at distance n adjacent to the existing subtree are added with probabilities proportional to alpha^{-n}, where alpha<1 is a positive real parameter. The heights of these…
Phylogenetic trees constitute an interesting class of objects for stochastic processes due to the non-standard nature of the space they inhabit. In particular, many statistical applications require the construction of Markov processes on…
A uniform recursive tree on $n$ vertices is a random tree where each possible $(n-1)!$ labeled recursive rooted tree is selected with equal probability. In this paper we introduce and study weighted trees, a non-uniform recursive tree model…
Enriching Brownian motion with regenerations from a fixed regeneration distribution $\mu$ at a particular regeneration rate $\kappa$ results in a Markov process that has a target distribution $\pi$ as its invariant distribution. For the…
Let $t$ be a rooted tree and $n_i(t)$ the number of nodes in $t$ having $i$ children. The degree sequence $(n_i(t),i\geq 0)$ of $t$ satisfies $\sum_{i\ge 0} n_i(t)=1+\sum_{i\ge 0} in_i(t)=|t|$, where $|t|$ denotes the number of nodes in…
We introduce a new class of lower bounds on the log partition function of a Markov random field which makes use of a reversed Jensen's inequality. In particular, our method approximates the intractable distribution using a linear…
We study a model of random $\mathcal{R}$-enriched trees that is based on weights on the $\mathcal{R}$-structures and allows for a unified treatment of a large family of random discrete structures. We establish distributional limits…
We study a model of growing planar tree graphs where in each time step we separate the tree into two components by splitting a vertex and then connect the two pieces by inserting a new link between the daughter vertices. This model…
In this paper, we show that a Galton-Watson tree conditioned to have a fixed number of particles in generation $n$ converges in distribution as $n\rightarrow\infty$, and with this tool we study the span and gap statistics of a branching…
The motivation for this paper is the study of the phase transition for recurrence/transience of a class of self-interacting random walks on trees, which includes the once-reinforced random walk. For this purpose, we define a quantity, that…
We show that the expected size of the maximum agreement subtree of two $n$-leaf trees, uniformly random among all trees with the shape, is $\Theta(\sqrt{n})$. To derive the lower bound, we prove a global structural result on a decomposition…
Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population \cite{nature_01}. This result brings our attention again to a math problem related to inbreeding family trees…
We investigate a network growth model in which the genealogy controls the evolution. In this model, a new node selects a random target node and links either to this target node, or to its parent, or to its grandparent, etc; all nodes from…