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As an emerging field, MS-based proteomics still requires software tools for efficiently storing and accessing experimental data. In this work, we focus on the management of LC-MS data, which are typically made available in standard…

Computational Engineering, Finance, and Science · Computer Science 2010-04-27 Sara Nasso , Francesco Silvestri , Francesco Tisiot , Barbara Di Camillo , Andrea Pietracaprina , Gianna Maria Toffolo

The idea of generalized indices is one of the success stories of database systems research. It has found its way to implementation in common database systems. GiST (Generalized Search Tree) and SP-GiST (Space-Partitioned Generalized Search…

Databases · Computer Science 2024-09-16 Maxime Schoemans , Walid G. Aref , Esteban Zimányi , Mahmoud Sakr

Compressed indexing is a powerful technique that enables efficient querying over data stored in compressed form, significantly reducing memory usage and often accelerating computation. While extensive progress has been made for…

Data Structures and Algorithms · Computer Science 2025-10-23 Rajat De , Dominik Kempa

Code retrieval, which retrieves code snippets based on users' natural language descriptions, is widely used by developers and plays a pivotal role in real-world software development. The advent of deep learning has shifted the retrieval…

Software Engineering · Computer Science 2024-12-17 Wenchao Gu , Ensheng Shi , Yanlin Wang , Lun Du , Shi Han , Hongyu Zhang , Dongmei Zhang , Michael R. Lyu

Configuring databases for efficient querying is a complex task, often carried out by a database administrator. Solving the problem of building indexes that truly optimize database access requires a substantial amount of database and domain…

Databases · Computer Science 2024-04-12 Gabriel Paludo Licks , Felipe Meneguzzi

Implicit neural representations (INRs) have become an important method for encoding various data types, such as 3D objects or scenes, images, and videos. They have proven to be particularly effective at representing 3D content, e.g., 3D…

Machine Learning · Computer Science 2025-01-28 Yushi Guan , Daniel Kwan , Ruofan Liang , Selvakumar Panneer , Nilesh Jain , Nilesh Ahuja , Nandita Vijaykumar

The data structure at the core of large-scale search engines is the inverted index, which is essentially a collection of sorted integer sequences called inverted lists. Because of the many documents indexed by such engines and stringent…

Information Retrieval · Computer Science 2022-02-08 Giulio Ermanno Pibiri , Rossano Venturini

Modern business applications and scientific databases call for inherently dynamic data storage environments. Such environments are characterized by two challenging features: (a) they have little idle system time to devote on physical…

Databases · Computer Science 2012-03-02 Felix Halim , Stratos Idreos , Panagiotis Karras , Roland H. C. Yap

We present highly optimized data structures for the dynamic predecessor problem, where the task is to maintain a set $S$ of $w$-bit numbers under insertions, deletions, and predecessor queries (return the largest element in $S$ no larger…

Data Structures and Algorithms · Computer Science 2021-04-15 Patrick Dinklage , Johannes Fischer , Alexander Herlez

Multidimensional data are becoming more prevalent, partly due to the rise of the Internet of Things (IoT), and with that the need to ingest and analyze data streams at rates higher than before. Some industrial IoT applications require…

Databases · Computer Science 2017-07-05 Juan A. Colmenares , Reza Dorrigiv , Daniel G. Waddington

We introduce INSTRUCTOR, a new method for computing text embeddings given task instructions: every text input is embedded together with instructions explaining the use case (e.g., task and domain descriptions). Unlike encoders from prior…

Computation and Language · Computer Science 2023-05-31 Hongjin Su , Weijia Shi , Jungo Kasai , Yizhong Wang , Yushi Hu , Mari Ostendorf , Wen-tau Yih , Noah A. Smith , Luke Zettlemoyer , Tao Yu

We propose a method to create document representations that reflect their internal structure. We modify Tree-LSTMs to hierarchically merge basic elements such as words and sentences into blocks of increasing complexity. Our Structure…

Computation and Language · Computer Science 2019-10-08 Khalil Mrini , Claudiu Musat , Michael Baeriswyl , Martin Jaggi

Tabular data is arguably one of the most commonly used data structures in various practical domains, including finance, healthcare and e-commerce. The inherent heterogeneity allows tabular data to store rich information. However, based on a…

Machine Learning · Computer Science 2023-06-01 Kuan-Yu Chen , Ping-Han Chiang , Hsin-Rung Chou , Ting-Wei Chen , Tien-Hao Chang

A binary trie is a sequential data structure for a dynamic set on the universe $\{0,\dots,u-1\}$ supporting Search with $O(1)$ worst-case step complexity, and Insert, Delete, and Predecessor operations with $O(\log u)$ worst-case step…

Data Structures and Algorithms · Computer Science 2025-09-04 Jeremy Ko

Neural networks provide new possibilities to automatically learn complex language patterns and query-document relations. Neural IR models have achieved promising results in learning query-document relevance patterns, but few explorations…

Information Retrieval · Computer Science 2019-05-23 Zhuyun Dai , Jamie Callan

Retrieval-augmented generation over semi-structured sources such as HTML is constrained by a mismatch between document structure and the flat, sequence-based interfaces of today's embedding and generative models. Retrieval pipelines often…

Information Retrieval · Computer Science 2026-04-24 Mike Rainey , Umut Acar , Muhammed Sezer

This paper introduces new algorithms and data structures for quick counting for machine learning datasets. We focus on the counting task of constructing contingency tables, but our approach is also applicable to counting the number of…

Artificial Intelligence · Computer Science 2009-09-25 A. Moore , M. S. Lee

The task of completing knowledge triplets has broad downstream applications. Both structural and semantic information plays an important role in knowledge graph completion. Unlike previous approaches that rely on either the structures or…

Computation and Language · Computer Science 2022-09-20 Jianhao Shen , Chenguang Wang , Linyuan Gong , Dawn Song

Retrieving relevant documents from a corpus is typically based on the semantic similarity between the document content and query text. The inclusion of structural relationship between documents can benefit the retrieval mechanism by…

Information Retrieval · Computer Science 2022-04-05 Natraj Raman , Sameena Shah , Manuela Veloso

Open-domain long-form text generation requires generating coherent, comprehensive responses that address complex queries with both breadth and depth. This task is challenging due to the need to accurately capture diverse facets of input…

Information Retrieval · Computer Science 2024-10-22 Kashob Kumar Roy , Pritom Saha Akash , Kevin Chen-Chuan Chang , Lucian Popa