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This work studies the impact of time- synchronization in molecular timing (MT) channels by analyzing three different modulation techniques. The first requires transmitter-receiver synchronization and is based on modulating information on…

Information Theory · Computer Science 2016-09-08 Nariman Farsad , Yonathan Murin , Weisi Guo , Chan-Byoung Chae , Andrew Eckford , Andrea Goldsmith

This paper studies optimization of zero-delay source-channel codes, and specifically the problem of obtaining globally optimal transformations that map between the source space and the channel space, under a given transmission power…

Information Theory · Computer Science 2013-04-26 Mustafa S. Mehmetoglu , Emrah Akyol , Kenneth Rose

The well-known trace reconstruction problem is the problem of inferring an unknown source string $x \in \{0,1\}^n$ from independent "traces", i.e. copies of $x$ that have been corrupted by a $\delta$-deletion channel which independently…

Data Structures and Algorithms · Computer Science 2022-11-08 Xi Chen , Anindya De , Chin Ho Lee , Rocco A. Servedio , Sandip Sinha

Construction of capacity achieving deletion correcting codes has been a baffling challenge for decades. A recent breakthrough by Brakensiek $et~al$., alongside novel applications in DNA storage, have reignited the interest in this…

Information Theory · Computer Science 2018-06-26 Jin Sima , Netanel Raviv , Jehoshua Bruck

We consider the problem of optimally allocating a given total storage budget in a distributed storage system. A source has a data object which it can code and store over a set of storage nodes; it is allowed to store any amount of coded…

Information Theory · Computer Science 2016-11-15 Derek Leong , Alexandros G. Dimakis , Tracey Ho

In the trace reconstruction problem our goal is to learn an unknown string $x\in \{0,1\}^n$ given independent traces of $x$. A trace is obtained by independently deleting each bit of $x$ with some probability $\delta$ and concatenating the…

Data Structures and Algorithms · Computer Science 2024-12-02 Anders Aamand , Allen Liu , Shyam Narayanan

This work studies problems in data reconstruction, an important area with numerous applications. In particular, we examine the reconstruction of binary and non-binary sequences from synchronization (insertion/deletion-correcting) codes.…

Information Theory · Computer Science 2017-03-09 Frederic Sala , Ryan Gabrys , Clayton Schoeny , Lara Dolecek

We compare asynchronous vs. synchronous update of discrete dynamical networks and find that a simple time delay in the nodes may induce a reproducible deterministic dynamics even in the case of asynchronous update in random order. In…

Molecular Networks · Quantitative Biology 2007-05-23 Konstantin Klemm , Stefan Bornholdt

Neural-network models of high-level brain functions such as memory recall and reasoning often rely on the presence of stochasticity. The majority of these models assumes that each neuron in the functional network is equipped with its own…

Neurons and Cognition · Quantitative Biology 2022-05-17 Jakob Jordan , Mihai A. Petrovici , Oliver Breitwieser , Johannes Schemmel , Karlheinz Meier , Markus Diesmann , Tom Tetzlaff

This paper provides an algorithmic framework for obtaining fast distributed algorithms for a highly-dynamic setting, in which *arbitrarily many* edge changes may occur in each round. Our algorithm significantly improves upon prior work in…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-13 Keren Censor-Hillel , Neta Dafni , Victor I. Kolobov , Ami Paz , Gregory Schwartzman

We consider binary input deletion/substitution channels, which model certain types of synchronization errors encountered in practice. Specifically, we focus on the regime of small deletion and substitution probabilities, and by extending an…

Information Theory · Computer Science 2025-07-29 Mohammad Kazemi , Tolga M. Duman

Consider a complete communication network of $n$ nodes, where the nodes receive a common clock pulse. We study the synchronous $c$-counting problem: given any starting state and up to $f$ faulty nodes with arbitrary behaviour, the task is…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-24 Christoph Lenzen , Joel Rybicki , Jukka Suomela

We consider two fundamental communication tasks in arbitrary radio networks: broadcasting (information from one source has to reach all nodes) and gossiping (every node has a message and all messages have to reach all nodes). Nodes are…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-11 Adam Gańczorz , Tomasz Jurdziński , Andrzej Pelc

We consider streaming over a peer-to-peer network with homogeneous nodes in which a single source broadcasts a data stream to all the users in the system. Peers are allowed to enter or leave the system (adversarially) arbitrarily. Previous…

Networking and Internet Architecture · Computer Science 2014-07-09 Shaileshh Bojja Venkatakrishnan , Pramod Viswanath

The paper introduces a new technique for compressing Binary Decision Diagrams in those cases where random access is not required. Using this technique, compression and decompression can be done in linear time in the size of the BDD and…

Artificial Intelligence · Computer Science 2008-12-18 Esben Rune Hansen , S. Srinivasa Rao , Peter Tiedemann

Relay networks having $n$ source-to-destination pairs and $m$ half-duplex relays, all operating in the same frequency band in the presence of block fading, are analyzed. This setup has attracted significant attention and several relaying…

Information Theory · Computer Science 2016-11-15 Shengshan Cui , Alexander M. Haimovich , Oren Somekh , H. Vincent Poor

We study two basic problems regarding edit error, i.e. document exchange and error correcting codes for edit errors (insdel codes). For message length $n$ and edit error upper bound $k$, it is known that in both problems the optimal sketch…

Data Structures and Algorithms · Computer Science 2018-07-18 Kuan Cheng , Zhengzhong Jin , Xin Li , Ke Wu

This paper considers the basic $\mathcal{PULL}$ model of communication, in which in each round, each agent extracts information from few randomly chosen agents. We seek to identify the smallest amount of information revealed in each…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-07 Lucas Boczkowski , Amos Korman , Emanuele Natale

Two mobile agents, starting from different nodes of a network modeled as a graph, and woken up at possibly different times, have to meet at the same node. This problem is known as rendezvous. We consider deterministic distributed rendezvous…

Data Structures and Algorithms · Computer Science 2023-11-23 Avery Miller , Andrzej Pelc

We consider the possibility of using stabilizer states to perform deterministic dense coding among multiple senders and a single receiver. In the model we studied, the utilized stabilizer state is partitioned into several subsystems and…

Quantum Physics · Physics 2011-08-26 Guoming Wang , Mingsheng Ying
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