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Modern algorithms for de novo prediction of protein structures typically output multiple full-length models (decoys) rather than a single solution. Subsequent clustering of such decoys is used both to gauge the success of the modelling and…

Biomolecules · Quantitative Biology 2017-12-12 Dmytro Guzenko , Sergei V. Strelkov

Generalized linear models (GLMs) arguably represent the standard approach for statistical regression beyond the Gaussian likelihood scenario. When Bayesian formulations are employed, the general absence of a tractable posterior distribution…

Computation · Statistics 2024-07-03 Niccolò Anceschi , Augusto Fasano , Beatrice Franzolini , Giovanni Rebaudo

Graph clustering has many important applications in computing, but due to the increasing sizes of graphs, even traditionally fast clustering methods can be computationally expensive for real-world graphs of interest. Scalability problems…

Social and Information Networks · Computer Science 2018-10-18 Kimon Fountoulakis , David F. Gleich , Michael W. Mahoney

Convolutional neural networks (CNNs) provide flexible function approximations for a wide variety of applications when the input variables are in the form of images or spatial data. Although CNNs often outperform traditional statistical…

Methodology · Statistics 2024-05-24 Yeseul Jeon , Won Chang , Seonghyun Jeong , Sanghoon Han , Jaewoo Park

Diagnosis and prediction in some domains, like medical and industrial diagnosis, require a representation that combines uncertainty management and temporal reasoning. Based on the fact that in many cases there are few state changes in the…

Artificial Intelligence · Computer Science 2013-01-30 Gustavo Arroyo-Figueroa , Luis Enrique Sucar

Learning continuous-time dynamics on complex networks is crucial for understanding, predicting and controlling complex systems in science and engineering. However, this task is very challenging due to the combinatorial complexities in the…

Social and Information Networks · Computer Science 2020-06-19 Chengxi Zang , Fei Wang

Intermittent renewable energy resources like wind and solar pose great uncertainty of multiple time scales, from minutes to years, on the design and operation of power systems. Energy system optimization models have been developed to find…

Optimization and Control · Mathematics 2022-04-27 Yuheng Zhang , Vivian Cheng , Dharik S. Mallapragada , Jie Song , Guannan He

Convolutional neural networks (CNNs) have been established as the main workhorse in image data processing; nonetheless, they require large amounts of data to train, often produce overconfident predictions, and frequently lack the ability to…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Sarah Harkins Dayton , Hayden Everett , Ioannis Schizas , David L. Boothe , Vasileios Maroulas

Modularity is a very widely used measure of the level of clustering or community structure in networks. Here we consider a recent generalisation of the definition of modularity to temporal graphs, whose edge-sets change over discrete…

Combinatorics · Mathematics 2025-07-24 Vilhelm Agdur , Jessica Enright , Laura Larios-Jones , Kitty Meeks , Fiona Skerman , Ella Yates

The problem of change-point estimation is considered under a general framework where the data are generated by unknown stationary ergodic process distributions. In this context, the consistent estimation of the number of change-points is…

Machine Learning · Statistics 2013-02-15 Azaden Khaleghi , Daniil Ryabko

We consider a simulation optimization problem for a context-dependent decision-making. A Gaussian mixture model is proposed to capture the performance clustering phenomena of context-dependent designs. Under a Bayesian framework, we develop…

Methodology · Statistics 2020-12-15 Haidong Li , Henry Lam , Yijie Peng

This paper introduces a novel model-based clustering approach for clustering time series which present changes in regime. It consists of a mixture of polynomial regressions governed by hidden Markov chains. The underlying hidden process for…

Machine Learning · Statistics 2013-12-30 Faicel Chamroukhi , Allou Samé , Patrice Aknin , Gérard Govaert

Clustering aims to group unlabeled objects based on similarity inherent among them into clusters. It is important for many tasks such as anomaly detection, database sharding, record linkage, and others. Some clustering methods are taken as…

Databases · Computer Science 2024-12-02 Binbin Gu , Saeed Kargar , Faisal Nawab

Temporal networks are an important type of network whose topological structure changes over time. Compared with methods on static networks, temporal network embedding (TNE) methods are facing three challenges: 1) it cannot describe the…

Social and Information Networks · Computer Science 2022-12-14 Shanfan Zhang , Zhan Bu

Bayesian nonparametric mixtures and random partition models are powerful tools for probabilistic clustering. However, standard independent mixture models can be restrictive in some applications such as inference on cell lineage due to the…

Methodology · Statistics 2025-07-15 Giovanni Rebaudo , Peter Mueller

Spatial clustering is a crucial field, finding universal use across criminology, pathology, and urban planning. However, most spatial clustering algorithms cannot pull information from nearby nodes and suffer performance drops when dealing…

Machine Learning · Computer Science 2025-03-12 Aidan Gao , Junhong Lin

The growing share of intermittent renewable energy sources, storage technologies, and the increasing degree of so-called sector coupling necessitates optimization-based energy system models with high temporal and spatial resolutions, which…

Optimization and Control · Mathematics 2021-11-24 Maximilian Hoffmann , Leander Kotzur , Detlef Stolten

Eulerian nonlinear uncertainty propagation methods often suffer from finite domain limitations and computational inefficiencies. A recent approach to this class of algorithm, Grid-based Bayesian Estimation Exploiting Sparsity, addresses the…

Chaotic Dynamics · Physics 2025-08-20 Benjamin L. Hanson , Carlos Rubio , Adrián García-Gutiérrez , Thomas Bewley

Human cognition operates on a "Global-first" cognitive mechanism, prioritizing information processing based on coarse-grained details. This mechanism inherently possesses an adaptive multi-granularity description capacity, resulting in…

Machine Learning · Computer Science 2024-01-22 Shuyin Xia , Guoyin Wang , Xinbo Gao , Xiaoyu Lian

Many community detection algorithms are inherently stochastic, leading to variations in their output depending on input parameters and random seeds. This variability makes the results of a single run of these algorithms less reliable.…

Social and Information Networks · Computer Science 2025-02-25 Yasamin Tabatabaee , Eleanor Wedell , Minhyuk Park , Tandy Warnow
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