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The paradigm that the primary amino acid sequence prescribes structure and thus function has for a long time been central to the understanding of protein science. Though the theory is supported by the behaviour of most structured proteins,…

Biological Physics · Physics 2022-12-19 Rickie Xian , Sarah Rauscher

Information geometric techniques and inductive inference methods hold great promise for solving computational problems of interest in classical and quantum physics, especially with regard to complexity characterization of dynamical systems…

Mathematical Physics · Physics 2015-06-04 S. A. Ali , C. Cafaro , A. Giffin , D. -H. Kim

The finite-difference time-domain (FDTD) algorithm is a popular numerical method for solving electromagnetic problems. FDTD simulations can suffer from instability due to the explicit nature of the method. Stability enforcement can be…

Computational Engineering, Finance, and Science · Computer Science 2018-12-26 Fadime Bekmambetova , Xinyue Zhang , Piero Triverio

Iterated function systems (IFS) provide a powerful method for constructing fractals and modeling complex structures. This paper develops the notion of a dynamical system of IFS to study how an initial IFS evolves over time. We construct a…

General Mathematics · Mathematics 2024-10-11 Praveen M

Physical systems behave according to their underlying dynamical equations which, in turn, can be identified from experimental data. Explaining data requires selecting mathematical models that best capture the data regularities. Identifying…

Data Analysis, Statistics and Probability · Physics 2014-03-18 Carlo Cafaro

Engineering simulations are usually based on complex, grid-based, or mesh-free methods for solving partial differential equations. The results of these methods cover large fields of physical quantities at very many discrete spatial…

Fluid Dynamics · Physics 2025-08-08 Eduardo Di Costanzo , Niklas Kühl , Jean-Christophe Marongiu , Thomas Rung

Integrated with a high share of Inverter-Based Resources (IBRs), microgrids face increasing complexity of frequency dynamics, especially after unintentional islanding from the maingrid. These IBRs, on the other hand, provide more control…

Systems and Control · Electrical Eng. & Systems 2024-02-22 Zhongda Chu , Guoxuan Cui , Fei Teng

The effectiveness of data-driven techniques significantly relies on the input signal used to generate the training data. Nevertheless, there is a notable gap in research when it comes to designing excitation signals for identifying…

Systems and Control · Electrical Eng. & Systems 2024-10-02 Max Heinz Herkersdorf , Tarek Koesters , Oliver Nelles

We introduce a computationally efficient method for the automation of inverse design in science and engineering. Based on simple least-square regression, the underlying dynamic mode decomposition algorithm can be used to construct a…

Machine Learning · Computer Science 2025-02-14 Yunpeng Zhu , Liangliang Cheng , Anping Jing , Hanyu Huo , Ziqiang Lang , Bo Zhang , J. Nathan Kutz

Efficiently estimating system dynamics from data is essential for minimizing data collection costs and improving model performance. This work addresses the challenge of designing future control inputs to maximize information gain, thereby…

Systems and Control · Electrical Eng. & Systems 2025-04-29 Joshua Ott , Mykel J. Kochenderfer , Stephen Boyd

Part 1 has studied the conversion of observed random process with its hidden information to related dynamic process, applying entropy functional measure (EF) of the random process and path functional information measure (IPF) of the dynamic…

Adaptation and Self-Organizing Systems · Physics 2013-08-20 Vladimir S. Lerner

We propose a unified theoretical framework for quantifying spatio-temporal interactions in a stochastic dynamical system based on information geometry. In the proposed framework, the degree of interactions is quantified by the divergence…

Neurons and Cognition · Quantitative Biology 2016-12-08 Masafumi Oizumi , Naotsugu Tsuchiya , Shun-ichi Amari

We show a relationship between the entropy production in stochastic thermodynamics and the stochastic interaction in the information integrated theory. To clarify this relationship, we newly introduce an information geometric interpretation…

Statistical Mechanics · Physics 2020-07-15 Sosuke Ito , Masafumi Oizumi , Shun-ichi Amari

Complex systems, from the human brain to the global economy, are made of multiple elements that interact in such ways that the behaviour of the `whole' often seems to be more than what is readily explainable in terms of the `sum of the…

Neurons and Cognition · Quantitative Biology 2021-09-28 Pedro A. M. Mediano , Fernando E. Rosas , Andrea I Luppi , Robin L. Carhart-Harris , Daniel Bor , Anil K. Seth , Adam B. Barrett

Entropic Dynamics is an information-based framework that seeks to derive the laws of physics as an application of the methods of entropic inference. The dynamics is derived by maximizing an entropy subject to constraints that represent the…

Quantum Physics · Physics 2015-06-23 Selman Ipek , Ariel Caticha

Newtonian dynamics is derived from prior information codified into an appropriate statistical model. The basic assumption is that there is an irreducible uncertainty in the location of particles so that the state of a particle is defined by…

Classical Physics · Physics 2009-05-27 Ariel Caticha , Carlo Cafaro

Optimally-shaped electromagnetic fields have the capacity to coherently control the dynamics of quantum systems and thus offer a promising means for controlling molecular transformations relevant to chemical, biological, and materials…

Quantum Physics · Physics 2021-06-08 Alicia B. Magann , Matthew D. Grace , Herschel A. Rabitz , Mohan Sarovar

Entropy governs molecular self-assembly, phase transitions, and material stability, yet remains challenging to quantify and directly control in molecular systems. Here, we demonstrate that the computable information density (CID), a data…

Statistical Mechanics · Physics 2026-02-27 Ashley Z. Guo , Kaelyn Chang , Nicholas J. Corrente

Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into…

Physics and Society · Physics 2021-04-29 Felipe Xavier Costa , Pedro Pessoa

This work introduces Information Inference Diagrams (I2Ds), a modeling framework aiming to complement existing approaches for privacy and security analysis of distributed systems. It is intended to support established threat modeling…

Cryptography and Security · Computer Science 2025-10-28 Sebastian Rehms , Stefan Köpsell , Verena Klös , Florian Tschorsch