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Microtubule dynamics is largely influenced by nucleotide hydrolysis and the resultant tubulin configuration changes. The GTP cap model has been proposed to interpret the stabilizing mechanism of microtubule growth from the view of…

Biological Physics · Physics 2015-05-30 Xiang-Ying Ji , Xi-Qiao Feng

We explore the phase behavior and structure of orthogonal smectic liquid crystals consisting of bent-core molecules (BCMs) by means of Monte Carlo molecular simulations. A simple athermal molecular model is introduced that describes the…

Soft Condensed Matter · Physics 2016-07-26 Stavros D. Peroukidis , Alexandros G. Vanakaras , Demetri J. Photinos

Solidification pattern during nonequilibrium crystallization is among the most important microstructures in the nature and technical realms. Phase field crystal (PFC) model could simulate the pattern formation during equilibrium…

Materials Science · Physics 2021-04-12 Kun Wang , Shifang Xiao , Jun Chen , Wangyu Hu

The jumping-droplet condensation, namely the out-of-plane jumping of condensed droplets upon coalescence, has been a promising technical innovation in the fields of energy harvesting, droplet manipulation, thermal management, etc., yet is…

Fluid Dynamics · Physics 2024-08-26 Shan Gao , Jian Qu , Zhichun Liu , Weigang Ma

This paper presents a detailed computational protocol for atomistic simulation of the formation and growth of metal-containing nanostructures during the Focused Electron Beam Induced Deposition (FEBID) process. The protocol is based upon…

Chemical Physics · Physics 2023-09-06 Alexey Prosvetov , Alexey V. Verkhovtsev , Gennady B. Sushko , Andrey V. Solov'yov

Lead (Pb) is a typical low-melting-point ductile metal and serves as an important model material in the study of dynamic responses. Under shock-wave loading, its dynamic mechanical behavior comprises two key phenomena: plastic deformation…

Materials Science · Physics 2025-11-18 Enze Hou , Xiaoyang Wang , Han Wang

Experimental investigations of the phase transition in GeTe provide contradictory conclusions regarding the nature of the phase transition. Considering growing interest in technological applications of GeTe, settling these disputes is of…

Materials Science · Physics 2022-10-13 Đorđe Dangić , Stephen Fahy , Ivana Savić

Even with the most advanced computational capabilities, high-fidelity (e.g., large-eddy) simulations of large-scale rocket engines remain far out of reach. In the current work, we develop and establish a component-based reduced-order…

Fluid Dynamics · Physics 2026-04-20 Brody Gatza , Cheng Huang

The molecular dynamics method is applied to simulate the recrystallization of an amorphous/crystalline silicon interface. The atomic structure of the amorphous material is constructed with the method of Wooten, Winer, and Weaire. The…

Computational Physics · Physics 2011-07-07 Christophe Krzeminski , Quentin Brulin , V. Cuny , Emmanuel Lecat , Evelyne Lampin , Fabrizio Cleri

Dipolar Bose-Einstein condensates have recently attracted much attention in the world of quantum many body experiments. While the theoretical principles behind these experiments are typically supported by numerical simulations, the…

Quantum Physics · Physics 2019-06-25 Jan-Frederik Mennemann , Tim Langen , Lukas Exl , Norbert J. Mauser

We present a new method for simulating crystal growth by energetic beam deposition. The method combines a Kinetic Monte-Carlo simulation for the thermal surface diffusion with a small scale molecular dynamics simulation of every single…

Materials Science · Physics 2009-10-31 Joachim Jacobsen , B. H. Cooper , James P. Sethna

Compound-tunable embedding potential (CTEP) method is proposed. A fragment of some chemical compound, "main cluster" in the present paper, is limited by boundary anions such that the nearest environmental atoms are cations. The CTEP method…

Chemical Physics · Physics 2021-05-12 D. A. Maltsev , Yu. V. Lomachuk , V. M. Shakhova , N. S. Mosyagin , L. V. Skripnikov , A. V. Titov

The central approximation made in classical molecular dynamics simulation of materials is the interatomic potential used to calculate the forces on the atoms. Great effort and ingenuity is required to construct viable functional forms and…

Computational Physics · Physics 2019-06-26 Mitchell A. Wood , Mary Alice Cusentino , Brian D. Wirth , Aidan P. Thompson

The core structure of dislocations is critical to their mobility, cross slip, and other plastic behaviors. Atomistic simulation of the core structure is limited by the size of first-principles density functional theory (DFT) calculation and…

Materials Science · Physics 2022-09-13 Fenglin Deng , Hongyu Wu , Ri He , Peijun Yang , Zhicheng Zhong

We present an evaluation of CSP-MACE-{\AA}, a machine learning interatomic potential intended to replace DFT in crystal structure prediction (CSP). We decompose the total energy into separate intramolecular and intermolecular components.…

The unique properties exhibited in immiscible metals, such as excellent strength, hardness, and radiation-damage tolerance, have stimulated the interest of many researchers. As a typical immiscible metal system, the Cu-W nano-multilayers…

Materials Science · Physics 2024-07-02 Jiahao Pan , Huiqun Cheng , Gaosheng Yan , Lei Zhang , Wenshan Yu , Shengping Shen

Covalent Organic Frameworks (COFs) are versatile two-dimensional (2D) materials for flexible electronics, catalysis, and sensing, owing to their tunable architectures and large surface areas. However, like most materials, COFs inevitably…

Dopants can significantly affect the properties of oxide ceramics through their impact on the property-determined microstructure characteristics such as grain boundary (GB) segregation, space charge layer formation in the GB vicinity, and…

Despite its relevance in biology and engineering, the molecular mechanism driving cavitation in water remains unknown. Using computer simulations, we investigate the structure and dynamics of vapor bubbles emerging from metastable water at…

Low-cost, non-empirical corrections to semi-local density functional theory are essential for accurately modeling transition metal chemistry. Here, we demonstrate the judiciously-modified density functional theory (jmDFT) approach with…

Materials Science · Physics 2022-05-25 Akash Bajaj , Chenru Duan , Aditya Nandy , Michael G. Taylor , Heather J. Kulik
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